Merge branch 'dev'

Author: daniel-rijsketic

unravel/allen_institute/abca/merfish/merfish_expression_to_nii.py

@@ -13,9 +13,9 @@
 
 Outputs:
     - <gene>.nii.gz for each requested gene, with the same affine and header as the reference .nii.gz
-    - Dir: [imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps/
-    - Dir with -c and -val: [imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps_<filter_column>-<filter_value>/
-    - Dir with -i: [imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps_<input_stem>/
+    - Dir: \[imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps/
+    - Dir with -c and -val: \[imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps_<filter_column>-<filter_value>/
+    - Dir with -i: \[imputed_]MERFISH[_neuronal|_nonneuronal]_expression_maps_<input_stem>/
     
 Notes:
 ------

unravel/allen_institute/abca/scRNA_seq/expression_summary.py

@@ -38,7 +38,7 @@
 
 Genes:
     - Use -g/--genes to summarize selected genes.
-    - If -g is omitted, all columns after the last *_color column are
+    - If -g is omitted, all columns after the last `*`_color column are
       assumed to contain gene-expression values.
 
 Species: