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Benchmark SLURM layout

Live benchmark launchers. Python entrypoints live in ../pipeline/, ../paper/, and ../utilities/. Run path: ../README.md.

Numbered runners

Prefix Role
00_* shared preamble
01_* MEDS extraction
02_*04_* Stage 0
04_*, 07_*, 08_* Stage 1
09_* Stage 2 array runner
10_*, 11_* Stage 3
12_* gated helpers
13_* extended outcome refresh
15_* stats regeneration
17_* additional-run jobfile generation and high-GPU helpers
18_* serial GPU runners and resume helpers

Local byproducts

Path Role
generated/statistics/ stats rerun jobfiles
generated/outcome_reruns/ one-off outcome refresh jobfiles
generated/generalizability_tests/ additional-run jobfiles
state/*.last_completed serial-runner resume markers

ref_qse/ holds vendored Stage 2/3 wrappers. Retired launchers belong in ../deprecated/slurm/.