All pull requests

Pull requests

• assignSpecies: memory no longer grows with the number of query sequences

  #2221·erikrikarddaniel opened Oct 11, 2026·

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• Expose number of bootstraps to user.

  #2214·Micro-Biology opened Sep 2, 2026·

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  1

• Binning quality score function

  #2179·MollyRbio opened Feb 13, 2026·

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  3

• DADA2 long read tutorial

  #2169·Yixuan39 opened Dec 16, 2025Contributor·

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• parallelization in filterAndTrim for Window OS

  #1812·cylyau opened Sep 8, 2023·

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• microbiome R pkg examples

  #1657·antagomir opened Dec 10, 2022·

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• c_assign_taxonomy2 constant sized blocks of working memory

  #1366·wbazant opened Jun 28, 2021·

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  2

• Filter out SSE usage for non-x86_64.

  #1147·terjekv opened Sep 28, 2020·

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• Fix "random_device: rdseed failed" error in assignTaxonomy()

  #1145·vrbacky opened Sep 25, 2020·

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• improve primer matching with orient=TRUE

  #956·gmagoon opened Feb 24, 2020·

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• Shiny DADA2

  #277·joey711 opened Jul 1, 2017Collaborator·

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  6