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Group the eight flagellar arrangement values under their axis, keeping flagellated as a parent (#625)
* Group the eight flagellar arrangement values under their axis, keeping flagellated as a parent METPO:1007005 flagellar arrangement was adopted as the grouping class for the flagellation-pattern values, but seven of the eight values stayed under METPO:1000704 flagellated and only polytrichous sat under the axis. The axis was near-empty and the values were split across two parents. Each of the eight now has both parents: flagellar arrangement, so the axis groups its values, and flagellated, so peritrichous still entails flagellated, motile and motility as it does today and as its definition ("A motility phenotype in which...") says. METPO already asserts two parents on nine rows in the numeric-limits family; OMP models the same axis the same way (OMP:0000078 flagellum arrangement phenotype). Verified with the repo's own template rule (stubs + metpo_sheet + properties + deprecated, ROBOT 1.9.10): robot diff against main shows exactly 8 axioms added and 0 removed; both builds are consistent under ELK. Closes #616 Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FcR9NMbL1o3svKyBqsNKpA * Rebuild release artifacts for the flagellar arrangement reparent Same command the artifact-freshness workflow runs, in obolibrary/odkfull:v1.6.1: make IMP=false PAT=false MIR=false TODAY=2026-06-12 prepare_release. robot diff of metpo.owl against main: 8 axioms added, 0 removed, the eight SubClassOf statements from the template change and nothing else. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FcR9NMbL1o3svKyBqsNKpA --------- Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
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‎metpo-base.json‎

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"sub" : "https://w3id.org/metpo/1005031",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005031",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005032",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005032",
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"obj" : "https://w3id.org/metpo/1007005"
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005034",
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"obj" : "https://w3id.org/metpo/1007005"
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005035",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005036",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005036",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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"sub" : "https://w3id.org/metpo/1005037",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005038",
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"pred" : "is_a",
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"sub" : "https://w3id.org/metpo/1007005",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000059"
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}, {
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"sub" : "https://w3id.org/metpo/1007006",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1007006",
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"pred" : "is_a",

‎metpo-base.obo‎

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@@ -10528,43 +10528,50 @@ name: peritrichous flagellation
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def: "A motility phenotype in which flagella are distributed over the entire cell surface." [] {IAO:0000119="OMP:0000078"}
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synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"}
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1053210533
[Term]
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id: METPO:1005032
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name: polar flagellation
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def: "A motility phenotype in which one or more flagella are located at one or both poles of the cell." []
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synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"}
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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[Term]
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id: METPO:1005033
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name: amphitrichous flagellation
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def: "A motility phenotype in which a single flagellum is present at each pole of the cell." []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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[Term]
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id: METPO:1005034
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name: lophotrichous flagellation
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def: "A motility phenotype in which a tuft of flagella is present at one or both poles of the cell." []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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[Term]
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id: METPO:1005035
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name: monotrichous flagellation
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def: "A motility phenotype in which a single flagellum is present at one pole of the cell." []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1055710562
[Term]
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id: METPO:1005036
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name: lateral flagellation
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def: "A motility phenotype in which flagella emerge from the lateral side of the cell." []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1056310569
[Term]
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id: METPO:1005037
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name: subpolar flagellation
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def: "A motility phenotype in which flagella are located near but not at the cell pole." []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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[Term]
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id: METPO:1005038
@@ -10602,6 +10609,7 @@ name: polytrichous flagellation
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def: "A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment." [] {IAO:0000119="MICRO:0000271"}
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comment: subset=metpo_proposal_2026_04; priority=MEDIUM; observations=4
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synonym: "polytrichous" EXACT []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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property_value: IAO:0000117 "Marcin Joachimiak" xsd:string
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‎metpo-base.owl‎

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<owl:Class rdf:about="https://w3id.org/metpo/1005031">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella are distributed over the entire cell surface.</obo:IAO_0000115>
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<oboInOwl:hasRelatedSynonym>flagellum arrangement</oboInOwl:hasRelatedSynonym>
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<rdfs:label>peritrichous flagellation</rdfs:label>
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<owl:Class rdf:about="https://w3id.org/metpo/1005032">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which one or more flagella are located at one or both poles of the cell.</obo:IAO_0000115>
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<oboInOwl:hasRelatedSynonym>flagellum arrangement</oboInOwl:hasRelatedSynonym>
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<rdfs:label>polar flagellation</rdfs:label>
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<owl:Class rdf:about="https://w3id.org/metpo/1005033">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a single flagellum is present at each pole of the cell.</obo:IAO_0000115>
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<rdfs:label>amphitrichous flagellation</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="https://w3id.org/metpo/1005034">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a tuft of flagella is present at one or both poles of the cell.</obo:IAO_0000115>
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<rdfs:label>lophotrichous flagellation</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="https://w3id.org/metpo/1005035">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a single flagellum is present at one pole of the cell.</obo:IAO_0000115>
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<rdfs:label>monotrichous flagellation</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="https://w3id.org/metpo/1005036">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella emerge from the lateral side of the cell.</obo:IAO_0000115>
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<rdfs:label>lateral flagellation</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="https://w3id.org/metpo/1005037">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella are located near but not at the cell pole.</obo:IAO_0000115>
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<rdfs:label>subpolar flagellation</rdfs:label>
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</owl:Class>
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<!-- https://w3id.org/metpo/1007006 -->
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<owl:Class rdf:about="https://w3id.org/metpo/1007006">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment.</obo:IAO_0000115>
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<obo:IAO_0000117>Marcin Joachimiak</obo:IAO_0000117>

‎metpo-full.json‎

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"sub" : "https://w3id.org/metpo/1005031",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005031",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005032",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005032",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005033",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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"sub" : "https://w3id.org/metpo/1005035",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005036",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005037",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1005037",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1007005"
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}, {
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"sub" : "https://w3id.org/metpo/1005038",
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"pred" : "is_a",
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"sub" : "https://w3id.org/metpo/1007005",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000059"
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}, {
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"sub" : "https://w3id.org/metpo/1007006",
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"pred" : "is_a",
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"obj" : "https://w3id.org/metpo/1000704"
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}, {
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"sub" : "https://w3id.org/metpo/1007006",
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"pred" : "is_a",

‎metpo-full.obo‎

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def: "A motility phenotype in which flagella are distributed over the entire cell surface." [] {IAO:0000119="OMP:0000078"}
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synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"}
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
1052910530

1053010531
[Term]
1053110532
id: METPO:1005032
1053210533
name: polar flagellation
1053310534
def: "A motility phenotype in which one or more flagella are located at one or both poles of the cell." []
1053410535
synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"}
1053510536
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
1053610538

1053710539
[Term]
1053810540
id: METPO:1005033
1053910541
name: amphitrichous flagellation
1054010542
def: "A motility phenotype in which a single flagellum is present at each pole of the cell." []
1054110543
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
1054210545

1054310546
[Term]
1054410547
id: METPO:1005034
1054510548
name: lophotrichous flagellation
1054610549
def: "A motility phenotype in which a tuft of flagella is present at one or both poles of the cell." []
1054710550
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1054910553
[Term]
1055010554
id: METPO:1005035
1055110555
name: monotrichous flagellation
1055210556
def: "A motility phenotype in which a single flagellum is present at one pole of the cell." []
1055310557
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1055510560
[Term]
1055610561
id: METPO:1005036
1055710562
name: lateral flagellation
1055810563
def: "A motility phenotype in which flagella emerge from the lateral side of the cell." []
1055910564
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1056110567
[Term]
1056210568
id: METPO:1005037
1056310569
name: subpolar flagellation
1056410570
def: "A motility phenotype in which flagella are located near but not at the cell pole." []
1056510571
is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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1056710574
[Term]
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id: METPO:1005038
@@ -10600,6 +10607,7 @@ name: polytrichous flagellation
1060010607
def: "A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment." [] {IAO:0000119="MICRO:0000271"}
1060110608
comment: subset=metpo_proposal_2026_04; priority=MEDIUM; observations=4
1060210609
synonym: "polytrichous" EXACT []
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is_a: METPO:1000704 ! flagellated
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is_a: METPO:1007005 ! flagellar arrangement
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property_value: IAO:0000117 "Marcin Joachimiak" xsd:string
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‎metpo-full.owl‎

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<owl:Class rdf:about="https://w3id.org/metpo/1005031">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella are distributed over the entire cell surface.</obo:IAO_0000115>
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<oboInOwl:hasRelatedSynonym>flagellum arrangement</oboInOwl:hasRelatedSynonym>
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<rdfs:label>peritrichous flagellation</rdfs:label>
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<owl:Class rdf:about="https://w3id.org/metpo/1005032">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which one or more flagella are located at one or both poles of the cell.</obo:IAO_0000115>
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<oboInOwl:hasRelatedSynonym>flagellum arrangement</oboInOwl:hasRelatedSynonym>
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<rdfs:label>polar flagellation</rdfs:label>
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<owl:Class rdf:about="https://w3id.org/metpo/1005033">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a single flagellum is present at each pole of the cell.</obo:IAO_0000115>
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<rdfs:label>amphitrichous flagellation</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="https://w3id.org/metpo/1005034">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a tuft of flagella is present at one or both poles of the cell.</obo:IAO_0000115>
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<rdfs:label>lophotrichous flagellation</rdfs:label>
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</owl:Class>
@@ -22568,6 +22572,7 @@
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<owl:Class rdf:about="https://w3id.org/metpo/1005035">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which a single flagellum is present at one pole of the cell.</obo:IAO_0000115>
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<rdfs:label>monotrichous flagellation</rdfs:label>
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</owl:Class>
@@ -22578,6 +22583,7 @@
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<owl:Class rdf:about="https://w3id.org/metpo/1005036">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella emerge from the lateral side of the cell.</obo:IAO_0000115>
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<rdfs:label>lateral flagellation</rdfs:label>
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</owl:Class>
@@ -22588,6 +22594,7 @@
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<owl:Class rdf:about="https://w3id.org/metpo/1005037">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A motility phenotype in which flagella are located near but not at the cell pole.</obo:IAO_0000115>
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<rdfs:label>subpolar flagellation</rdfs:label>
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</owl:Class>
@@ -22685,6 +22692,7 @@
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<!-- https://w3id.org/metpo/1007006 -->
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<owl:Class rdf:about="https://w3id.org/metpo/1007006">
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1000704"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/metpo/1007005"/>
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<obo:IAO_0000115>A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment.</obo:IAO_0000115>
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<obo:IAO_0000117>Marcin Joachimiak</obo:IAO_0000117>

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