CITATION.cff

cff-version: 1.2.0
message: "If you use this pipeline, please cite it."
title: "fcsumap: gated multi-sample flow cytometry UMAP pipeline"
abstract: >
  Command-line R pipeline that reads a batch of FCS files, derives a gating
  hierarchy from the data rather than from fixed coordinates, scores populations
  from a declarative gating strategy, and builds one shared UMAP embedding per
  panel group with QC figures for every gate.
authors:
  # Name split and affiliation email taken from this repository's git identity.
  # CHECK BOTH before publishing, and add `orcid:` if you have one — an ORCID
  # cannot be guessed, so it is omitted rather than filled with a placeholder
  # that would resolve to somebody else.
  - given-names: "Bhagesh"
    family-names: "Hunakunti"
    email: "bhunakun@uni-bonn.de"
license: MIT
# Must match the repository you actually create — no git remote was configured
# when this was written, so the slug below is the expected one, not a verified
# one.
repository-code: "https://github.com/bhagesh-h/fcsumap"
keywords:
  - flow cytometry
  - UMAP
  - gating
  - immunophenotyping
  - R