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Validator ignores allow_pooled / allow_anonymized: 'pooled' and 'anonymized' rejected on characteristics[age] and characteristics[sex] despite being the template's own examples

Status: Open.

#346 In bigbio/sdrf-pipelines;

· timosachsenberg opened on Aug 30, 2026

Bundled sdrf-templates drift from proteomics-sample-metadata under the same version string (dia-acquisition 1.1.0 rejects the recommended NT+AC acquisition method)

Status: Open.

#345 In bigbio/sdrf-pipelines;

· timosachsenberg opened on Aug 30, 2026

convert-openms fails on multiplexed SDRF when comment[label] uses CV terms

Status: Open.

#344 In bigbio/sdrf-pipelines;

· trishorts opened on Aug 28, 2026

Bundled ontology cache is stale: PRIDE:0001013 (study sample) missing, fails --use_ols_cache_only

Status: Open.

#341 In bigbio/sdrf-pipelines;

· ypriverol opened on Aug 27, 2026

Metaproteomics exclusions are ignored when combining templates

Status: Open.

#333 In bigbio/sdrf-pipelines;

· nithujohn opened on Aug 6, 2026

Add convert-relink converter for XL-MS SDRF files

Status: Open.

#283 In bigbio/sdrf-pipelines;

· ypriverol opened on Apr 6, 2026

We have cache ontologies for the main ontologies but others are mentioned and not cached

enhancementNew feature or requestNew feature or request

Status: Open.

#271 In bigbio/sdrf-pipelines;

· ypriverol opened on Feb 26, 2026

OpenMS converter should not fail on non-unimod modifications

low-priority

Status: Open.

#258 In bigbio/sdrf-pipelines;

· jpfeuffer opened on Feb 2, 2026

existing PRIDE ontology term is not found

Status: Open.

#245 In bigbio/sdrf-pipelines;

· Cajac102 opened on Jan 6, 2026

SDRF validation and mass tolerance

Status: Open.

#239 In bigbio/sdrf-pipelines;

· asierlarrea opened on Oct 17, 2025

Adding method for guessing closest schema beyond minimum for validation

Status: Open.

#238 In bigbio/sdrf-pipelines;

· noatgnu opened on Sep 9, 2025

Add utility method for reordering sdrf file column according to one or multiple schemas

enhancementNew feature or requestNew feature or request

Status: Open.

#232 In bigbio/sdrf-pipelines;

· noatgnu opened on May 21, 2025