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Pull requests: broadinstitute/gnomad_methods

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Pull requests list

Add get_primary_contigs helper
#846 opened Sep 16, 2026 by ch-kr Contributor Loading…
@mike-w-wilson
Optimizations to sex-ploidy adjustment and reducing groups during aggs Changelog: breaking change
#844 opened Sep 4, 2026 by mike-w-wilson Contributor Loading…
@mike-w-wilson @ch-kr
24
Add a gnomAD & Hail institutional-knowledge reference
#843 opened Aug 5, 2026 by jkgoodrich Contributor • Draft
1 task done
17
Bump the pip group across 2 directories with 2 updates dependencies Pull requests that update a dependency file python Pull requests that update Python code
#830 opened Apr 3, 2026 by dependabot Bot Loading…
Add per-variant constraint utility functions
#824 opened Mar 18, 2026 by jkgoodrich Contributor Loading…
2 of 3 tasks
@klaricch @mike-w-wilson @jkgoodrich
53
Add function for exploding intervals to loci Changelog: new feature
#789 opened Jul 3, 2025 by Ruchit10 Loading…
91
Implement Kyle's code for p_de_novo
#771 opened Mar 18, 2025 by KoalaQin Contributor • Draft
@KoalaQin
Add filter_meta_array and change filter_arrays_by_meta to support more complex items_to_filter parameters by using filter_meta_array Changelog: new feature
#725 opened Aug 19, 2024 by jkgoodrich Contributor Loading…
@klaricch @jkgoodrich
32
Deprecate get_most_severe_consequence_for_summary in favor of more flexible get_most_severe_csq_from_multiple_csq_lists Changelog: new feature
#714 opened Jun 25, 2024 by jkgoodrich Contributor Loading…
@klaricch @jkgoodrich
27
Initial upload of VQSR workflow Variant QC
#470 opened Jul 22, 2022 by LindoNkambule • Draft
@jkgoodrich
13
Fix ref_allele_mismatch in liftover_expr for indel variants
#273 opened Nov 18, 2020 by mkanai Contributor • Draft
3
ProTip! Exclude everything labeled bug with -label:bug.