long-read-pipelines/.github/workflows/ci_nightly.yml at 45c29af5429728edba7dd32a78170a53a7a7ae9a · broadinstitute/long-read-pipelines · GitHub

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# Nightly test of the main branch.

name: Nightly
on:
  schedule:
    - cron: '0 7 * * *' # run at 7AM UTC


jobs:
  # Run Python tests on Github runner
  tox_test:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.13]

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
        with:
          lfs: true

      - name: Setup Environment
        uses: ./.github/actions/setup-environment # Path to your composite action
        with:
          python-version: ${{ matrix.python-version }}
          conda-python-version: '3.12' # Keep this specific if miniwdl needs 3.12

      - name: Test with tox
        run: tox

      # Send Slack message on workflow failure
      - name: Slack Failure Notification
        if: failure()
        uses: rtCamp/action-slack-notify@v2.0.2
        env:
          SLACK_COLOR: '#DF5A49'
          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
          SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnabad.png?raw=true
          SLACK_USERNAME: long-read-pipelines

  nightly_test:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2

    # Runs a set of commands using the runners shell
    - name: Continuous integration test suite
      run: |
        echo 'Test temporarily disabled.'

    # Send Slack message on workflow failure
    - name: Slack Failure Notification
      if: failure()
      uses: rtCamp/action-slack-notify@v2.0.2
      env:
        SLACK_MESSAGE: 'Nightly test of the main branch failed.'
        SLACK_COLOR: '#DF5A49'
        SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
        SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnabad.png?raw=true
        SLACK_USERNAME: long-read-pipelines

    # Send Slack message on workflow success
    - name: Slack Success Notification
      if: success()
      uses: rtCamp/action-slack-notify@v2.0.2
      env:
        SLACK_MESSAGE: 'Nightly test of the main branch successful!'
        SLACK_COLOR: '#50D9C9'
        SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
        SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnagood.png?raw=true
        SLACK_USERNAME: long-read-pipelines