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Make preemption dependent on expected length

Status: Open.

#442 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Jan 26, 2024

API to pull WDL documentation from Dockstore to Terra

documentation

Status: Open.

#441 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Jan 23, 2024

Prep for SMRTLink v13

Status: Open.

#439 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Dec 1, 2023

Install samtools with libdeflate enabled

optimization

Status: Open.

#436 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Nov 23, 2023

Use sysmetic monitor to check GCP's preemption rates

Status: Open.

#434 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Nov 20, 2023

Update Dockerfiles for Faster Conda Dependency Resolution

Status: Open.

#433 In broadinstitute/long-read-pipelines;

· bshifaw opened on Oct 31, 2023

Make the finalization tasks take a manifest

Status: Open.

#432 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Oct 24, 2023

bump DV version to 1.6

Status: Open.

#431 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Oct 24, 2023

lr-metrics docker refers to a non-official build of GATK

help wantedExtra attention is neededExtra attention is needed

optimization

Status: Open.

#427 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Sep 27, 2023

Assembly pipeline output should give bgz files not gz files

high priorityHigh priorityHigh priority

Status: Open.

#426 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Sep 27, 2023

Documentation for Epi and CNV pipelines

documentation

Status: Open.

#425 In broadinstitute/long-read-pipelines;

· SHuang-Broad opened on Sep 21, 2023

Workflow Documentation

Status: Open.

#424 In broadinstitute/long-read-pipelines;

· bshifaw opened on Sep 20, 2023