licorice/licorice_activate.sh at master · bronte-stewart-lab/licorice · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
# run via: source licorice_activate.sh
# this MUST be run from within the licorice repository directory

REPO_CHECK=1
if [ ! -d "examples" ] || [ ! -d "install" ] || [ ! -d "templating" ]
then
  echo "This does not look like a LiCoRICE repository!"
  REPO_CHECK=0
fi

if [ $REPO_CHECK -eq 1 ]
then

  LICORICE_ROOT=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
  LICORICE_TEMPLATING_DIR=$LICORICE_ROOT/templating
  LICORICE_EXEC_STR="sudo PYTHONHOME=$VIRTUAL_ENV taskset 0x1 nice -n -20 ./timer"
  LICORICE_PS1_STR=LiCoRICE

  EXPERIMENT_DIR=$LICORICE_ROOT/..
  MODEL_DIR=$EXPERIMENT_DIR/models
  BINARY_DIR=$EXPERIMENT_DIR/run/out

  FILE_MODEL_NAME=$BINARY_DIR/model_name

  # export env variables
  export LICORICE_ROOT
  export LICORICE_TEMPLATING_DIR
  export LICORICE_EXEC_STR
  export LICORICE_PS1_STR
  export EXPERIMENT_DIR
  export MODEL_DIR
  export BINARY_DIR
  export FILE_MODEL_NAME


  # parse LiCoRICE model
  licorice_parse_model() {
    pushd $LICORICE_TEMPLATING_DIR
    python lico_parse.py -m $MODEL_DIR/$1.yaml
    popd

    printf "%s" "$1" > $FILE_MODEL_NAME
  }

  # compile LiCoRICE model
  licorice_compile_model() {
    printf 'Compiling: %s\n\n' "`cat $FILE_MODEL_NAME`"

    pushd $BINARY_DIR
    make clean
    make -j 2
    popd
  }

  # run LiCoRICE model
  licorice_run_model() {
    printf 'Running: %s\n\n' "`cat $FILE_MODEL_NAME`"

    pushd $BINARY_DIR
    licorice_shm_clear
    $LICORICE_EXEC_STR
    popd
  }

  # remove any compiled binaries
  licorice_wipe_binaries() {
    if [ -n "$BINARY_DIR" ]
    then
      rm -rf $BINARY_DIR/*
    else
      echo "WARNING: Could not find binaries directory. Not wiping anything."
    fi
  }

  # remove shm mappings
  licorice_shm_clear() {
    sudo rm -rf /dev/shm/*
  }

  # parse, compile, & run LiCoRICE model
  licorice_go() {
    licorice_wipe_binaries
    licorice_parse_model $1
    licorice_compile_model
    licorice_run_model
  }

  # deactivate licorice environemnt
  licorice_deactivate() {

    PS1=${PS1:(${#LICORICE_PS1_STR}+3)}

    unset LICORICE_ROOT
    unset LICORICE_TEMPLATING_DIR
    unset LICORICE_EXEC_STR
    unset LICORICE_PS1_STR
    unset EXPERIMENT_DIR
    unset MODEL_DIR
    unset BINARY_DIR
    unset FILE_MODEL_NAME

    unset -f licorice_parse_model
    unset -f licorice_compile_model
    unset -f licorice_run_model
    unset -f licorice_wipe_binaries
    unset -f licorice_shm_clear
    unset -f licorice_go
    unset -f licorice_deactivate
  }

  export LICORICE_ROOT
  # export shell functions
  export -f licorice_parse_model
  export -f licorice_compile_model
  export -f licorice_run_model
  export -f licorice_wipe_binaries
  export -f licorice_shm_clear
  export -f licorice_go

  # change prompt
  PS1="[$LICORICE_PS1_STR] $PS1"
  export PS1

fi