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Dev (0.33.0) - #185

Merged
matt-sd-watson merged 35 commits into
mainfrom
dev
Sep 24, 2026
Merged

Dev (0.33.0)#185
matt-sd-watson merged 35 commits into
mainfrom
dev

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@matt-sd-watson

@matt-sd-watson matt-sd-watson commented Sep 1, 2026 •
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[0.33.0] - 2026-09-08

Added

  • Prototype: query WSI zoomed patches on TCGA UNI
    embeddings (grouped or ungrouped) with GDC portal links + patch coordinates
  • Prototype: query WSI zoomed patches with Prism2 chat
  • Show viewport coordinates for WSI canvas on change
  • Draw polygons on the WSI canvas with annotorious
  • CLI script to convert annotorious WSI coords (JSON) to segmentation mask. Resolves CLI script to convert annotorious WSI annotations into segmentation mask #186
  • Neighbourhood enrichment heatmap in modal from overlay projection

Changed

  • Explicit installation of libvips in Actions (OS-specific)
  • Call multiprocessing freeze_support for enrichment analysis (squidpy)
  • Update from dependabot: soupsieve

@matt-sd-watson
Feat, draft: add osd coords to inner text
0ce1819
@matt-sd-watson
Draft 1: requests for hist2query w/ wsi crops
b57ea2e
@matt-sd-watson
Feat update: pass request args to hist2query
61d37da
@matt-sd-watson
Chore: convert results to dash ag grid
e883643
@matt-sd-watson
Chore: add tile number + coords to hist2query
cbd520e
@matt-sd-watson
Chore: change format of hist2query POST resp
fdc30f3
@matt-sd-watson
Feat: pie chart for hist2query tissue results
da70926
@matt-sd-watson
Fix: proper reset of ag query table on request error
0bab618
@matt-sd-watson
Chore: allow for external hist2query host + better modal open JS
6b5b51d
@matt-sd-watson
Feat, draft 1: add annotorious polygon annot to wsi canvas
ab49e0a
@matt-sd-watson
Change: better observer for wsi annot button
44b007c
@matt-sd-watson
Feat, draft: prism2 chat w/ hist2query
58cff14
@matt-sd-watson
Change: handle http exceptions + allow empty tile number
4a81797
@matt-sd-watson
Change: add checks for model terms acknowledgment
ba2fe71
@matt-sd-watson
feat, draft: open patch inside custom gdc viewer (tiles from API)
a9e58a3
@matt-sd-watson
Chore: convert tile numbers to grid dims + tidy GDC iframe
5b6f3ed
@matt-sd-watson
Chore: update GA with vips for all OS
4a414c0
@matt-sd-watson
Chore: change GA vips away from choco
a0df790
matt-sd-watson
matt-sd-watson commented Sep 4, 2026
View reviewed changes
Comment thread rakaia/callbacks/pixel.py
Comment thread rakaia/callbacks/pixel.py
Comment thread rakaia/register/query.py Outdated
Comment thread rakaia/register/query.py
matt-sd-watson
matt-sd-watson commented Sep 15, 2026
View reviewed changes
Comment thread CHANGELOG.md Outdated
matt-sd-watson
matt-sd-watson commented Sep 16, 2026
View reviewed changes
Comment thread rakaia/callbacks/object.py Outdated
matt-sd-watson
matt-sd-watson commented Sep 16, 2026
View reviewed changes
Comment thread rakaia/callbacks/pixel.py Outdated
matt-sd-watson
matt-sd-watson commented Sep 17, 2026
View reviewed changes
Comment thread rakaia/register/query.py Outdated
matt-sd-watson
matt-sd-watson commented Sep 24, 2026
View reviewed changes
Comment thread rakaia/assets/osd.js
@matt-sd-watson
matt-sd-watson merged commit 3a433fd into main Sep 24, 2026
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CLI script to convert annotorious WSI annotations into segmentation mask

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@matt-sd-watson