All pull requests

Pull requests

• Update Syntax for Compatibility with Nextflow 23.04.4

  #131·eptroendle opened Oct 5, 2023·

  ·

• Add nextflow dependency

  #129·pdp10 opened Oct 17, 2022·

  ·

• Fix dsl2 syntax errors

  #128·rdeborja opened Oct 17, 2022·

  ·
  1

• Enable medaka to run V4 primer scheme

  #126·pdp10 opened Aug 8, 2022·

  ·

• fix: update to artic 1.2.2

  #118·thomasbtf opened Feb 23, 2022·

  ·

• Add github action to build a Docker image and update for Nextflow 21.04.1

  #109·antunderwood opened Jun 28, 2021·

  ·

• Variant definitions

  #101·m-bull opened Apr 9, 2021Contributor·

  ·

• Illumina

  #100·dianalir opened Apr 8, 2021·

  ·

• Kubernetes process

  #82·ctr26 opened Nov 30, 2020·

  ·

• Adding mean coverage to qc.py

  #79·FredDodd6 opened Oct 8, 2020Contributor·

  ·
  1

• adding -f Mark reads as QCFAIL instead of excluding them to trim.

  #70·FredDodd6 opened Sep 9, 2020Contributor·

  ·
  5

• Add ampliconstats process for all the files (Samtools development branch)

  #58·ac55-sanger opened Jun 29, 2020Contributor·

  ·
  2