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When using the same raw files and protein sequence data, the detection results differ significantly across different versions.

MaxQuant

Status: Open.

#231 In cox-labs/CoxLab_Bug_Reporting;

· mondayz11 opened on Sep 16, 2026

proteinGroups.txt and other files were empty when using Maxquant running 84 samples on linux

MaxQuant

Status: Open.

#230 In cox-labs/CoxLab_Bug_Reporting;

· lishr0007-spec opened on Sep 4, 2026

Prepare protein assembly error Maxquant

MaxQuant

Status: Open.

#229 In cox-labs/CoxLab_Bug_Reporting;

· doanthaodinh opened on Sep 1, 2026

Perseus 2.1.4.0 and 2.1.5.0 exception 0xc0000409 in ucrtbase.dll, version: 10.0.17763.9020

Perseus

Status: Open.

#228 In cox-labs/CoxLab_Bug_Reporting;

· magnush0lm opened on Aug 31, 2026

what is calculated by post hoc tukey test in Perseus

Perseus

Status: Open.

#227 In cox-labs/CoxLab_Bug_Reporting;

· hrezvani2112 opened on Aug 28, 2026

Link to license is broken

MaxQuant

Status: Open.

#226 In cox-labs/CoxLab_Bug_Reporting;

· rtraborn opened on Aug 28, 2026

Feature Request: Combine columns values

Perseus Feature Request

Status: Open.

#221 In cox-labs/CoxLab_Bug_Reporting;

· dudumello opened on Jul 17, 2026

Linux MaxQuant 2.8.0: spawned search task crashes due to double-space argument parsing issue

MaxQuant

Status: Open.

#217 In cox-labs/CoxLab_Bug_Reporting;

· LamarSummor opened on Jun 3, 2026

error creating a sdrf file

MaxQuant

Status: Open.

#216 In cox-labs/CoxLab_Bug_Reporting;

· KUProteomics opened on May 29, 2026

MaxQuant 2.6.7.0 and 2.7.5.0 are completely unusable for TMT data aquired on an Astral

MaxQuant

Status: Open.

#214 In cox-labs/CoxLab_Bug_Reporting;

· seanh-funcphos opened on May 5, 2026

Mitochondrial Complex II Ontology is Outdated

Perseus

Status: Open.

#211 In cox-labs/CoxLab_Bug_Reporting;

· DarioS opened on Apr 17, 2026

Single Sample Pathway Analysis

Perseus Feature Request

Status: Open.

#210 In cox-labs/CoxLab_Bug_Reporting;

· DarioS opened on Apr 2, 2026