Issues

• Feature request: exportfeature_select_columns file from feature_select instead of full profile

  cytomining/pycytominer#759 · Filter by author jenna-tomkinson opened on Sep 9, 2026
  1

• Reordering drop_na_columns before other feature_select operations lead to 2–6x speedup on profiles

  cytomining/pycytominer#756 · Filter by author jenna-tomkinson opened on Sep 2, 2026

• Deprecating legacy API

  cytomining/pycytominer#705 · Filter by author axiomcura opened on Jun 5, 2026

• FeatureRequest: Migrate Dependabot configuration to support uv

  enhancement
  cytomining/pycytominer#667 · Filter by author axiomcura opened on Apr 29, 2026

• Question: How can we improve annotate by avoiding renaming of columns?

  enhancementquestion
  cytomining/pycytominer#660 · Filter by author jenna-tomkinson opened on Apr 21, 2026

• Remove temporary normalize() shim for string-encoded missing feature values

  Task

  cytomining/pycytominer#646 · Filter by author d33bs opened on Apr 1, 2026

• Enable CI docs environment to provision notebook dependencies

  Task

  cytomining/pycytominer#645 · Filter by author d33bs opened on Apr 1, 2026

• FeatureRequest: Faster Correlation Computation (Correlation Threshold Feature Selection)

  enhancement
  Feature

  cytomining/pycytominer#633 · Filter by author MattsonCam opened on Mar 3, 2026

• Address format_broad_cmap and clean_cellprofiler tight coupling

  Feature

  cytomining/pycytominer#625 · Filter by author d33bs opened on Feb 13, 2026

• Address automatic inference of output file type using filenames (CLI and core functions)

  Feature

  cytomining/pycytominer#624 · Filter by author d33bs opened on Feb 13, 2026

• Implement lazy file reader capabilities

  Feature

  cytomining/pycytominer#576 · Filter by author d33bs opened on Sep 5, 2025

• FeatureRequest: enable mulitple dataframe support

  Feature

  cytomining/pycytominer#574 · Filter by author d33bs opened on Sep 2, 2025
  3

• FeatureRequest: Assigning what is metadata versus feature`

  enhancement
  Feature

  cytomining/pycytominer#510 · Filter by author jenna-tomkinson opened on Feb 7, 2025
  1

• Add to maintainer offboarding procedures for special cases

  Task

  cytomining/pycytominer#489 · Filter by author d33bs opened on Dec 24, 2024
  2

• FeatureRequest: Automated identification and removal of non-biologically variant features

  enhancement
  Feature

  cytomining/pycytominer#452 · Filter by author hwarden162 opened on Sep 26, 2024
  18

• FeatureRequest: Machine Learning Data Split Functionality

  enhancement
  Feature

  cytomining/pycytominer#427 · Filter by author MikeLippincott opened on Aug 22, 2024
  3

  

• Complete Docker-Sponsored Open Source (DSOS) application process

  enhancement
  Task

  cytomining/pycytominer#399 · Filter by author d33bs opened on Apr 3, 2024
  3

• Isolate tests for Dockerfile builds using Poetry build includes/excludes

  cytomining/pycytominer#397 · Filter by author d33bs opened on Apr 3, 2024
  2

• FeatureRequest: Automatically generated dataframe schemas to catch errors

  enhancement
  cytomining/pycytominer#384 · Filter by author kenibrewer opened on Mar 27, 2024

• Switch to more stable test data path for CellLocations tests

  cytomining/pycytominer#375 · Filter by author kenibrewer opened on Mar 11, 2024
  6

• [Enhancement] Create bug report functionality

  cytomining/pycytominer#365 · Filter by author gwaybio opened on Jan 12, 2024
  2

• FeatureRequest: FeatureSet Class for Abstracting Feature columns

  enhancement
  cytomining/pycytominer#360 · Filter by author kenibrewer opened on Dec 12, 2023
  1

• FeatureRequest: Add refactor issue template

  enhancement
  cytomining/pycytominer#331 · Filter by author kenibrewer opened on Oct 26, 2023
  

• FeatureRequest: Create ProfileData Class

  enhancement
  cytomining/pycytominer#327 · Filter by author kenibrewer opened on Oct 7, 2023
  

• FeatureRequest: Minimum cell count per well at some(?) levels

  enhancement
  cytomining/pycytominer#317 · Filter by author bethac07 opened on Aug 16, 2023
  1