install.sh

#!/bin/bash

clear
echo
echo "======================================================================="
echo "|                                                                     |"
echo "|    full-stack-apache2-eprints-for-everyone-with-docker-compose      |"
echo "|                         by Erdal ALTIN                              |"
echo "|                                                                     |"
echo "======================================================================="
sleep 2

echo
# ----------------------- OS Information -------------------------------------
echo "[+] OS Information"
echo "-----------------------------------------------------------------------"

if [[ -f /etc/os-release ]]; then
	. /etc/os-release
	echo "Distro       : $PRETTY_NAME"
	echo "ID           : $ID"
	echo "ID_LIKE      : $ID_LIKE"
	id_like=$(grep -Pow 'ID_LIKE=\K[^;]*' /etc/os-release | tr -d '"' | grep -obe 'debian' -e 'ubuntu' -e 'centos' -e 'fedora' -e 'suse' -e 'rhel' | grep -oE '[A-Za-z]+' | head -n 1) 2>&1 > /dev/null
	echo "Version      : $VERSION_ID"
	echo "Codename     : $VERSION_CODENAME (or $UBUNTU_CODENAME)"
elif [[ -f /usr/lib/os-release ]]; then
	. /usr/lib/os-release
        echo "Distro       : $PRETTY_NAME"
        echo "ID           : $ID"
	echo "ID_LIKE      : $ID_LIKE"
	id_like=$(grep -Pow 'ID_LIKE=\K[^;]*' /usr/lib/os-release | tr -d '"' | grep -obe 'debian' -e 'ubuntu' -e 'centos' -e 'fedora' -e 'suse' -e 'rhel' | grep -oE '[A-Za-z]+' | head -n 1) 2>&1 > /dev/null
        echo "Version      : $VERSION_ID"
        echo "Codename     : $VERSION_CODENAME (or $UBUNTU_CODENAME)"
else
	echo "Cannot detect OS or os-release file not found"
#	exit 0
fi

unames=$(sudo uname -s)
unamem=$(sudo uname -m)
echo "Kernel       : $(sudo uname -r)"
echo "Architecture : $unamem"
echo "Hostname     : $(sudo hostname)"
#echo "Uptime       : $(sudo uptime -p 2>/dev/null || uptime)"

operation_system_id=("centos", "debian", "fedora", "raspbian", "rhel", "sles", "static", "ubuntu")
if [[ ${operation_system_id[@]} =~ "$ID" ]]
then
	operation_system="$ID"
	codename="$VERSION_CODENAME"
else
	operation_system="$id_like"
	upper_operation_system="${id_like^^}"
	declare -n codename="${upper_operation_system}_CODENAME"
fi

echo
echo "Done ✓"
echo "======================================================================="

# the "lpms" is an abbreviation of Linux Package Management System
lpms=""
for i in apk dnf yum apt apt-get dpkg zypper pacman
do
	if [ -x "$(command -v $i)" ]; then
		if [ "$i" == "apk" ]
		then
			lpms=$i
			sudo apk add --no-cache --upgrade grep
			break
		elif [ "$i" == "dnf" ] && ([ "$ID" == "fedora" ] || ([ "$ID" != "centos" ] && [[ "$ID_LIKE" == *"fedora"* ]]) || ([[ "$ID_LIKE" == *"rhel"* ]] && [ "$unamem" == "s390x" ]))
		then
			lpms=$i
			break
		elif [ "$i" == "yum" ] && ([ "$ID" == "centos" ] || ([ "$ID" != "fedora" ] && [[ "$ID_LIKE" == *"fedora"* ]]) || ([[ "$ID_LIKE" == *"rhel"* ]] && [ "$unamem" == "s390x" ]))
		then
			lpms=$i
			break
		elif ([ "$i" == "apt" ] || [ "$i" == "apt-get" ]) && ([[ "$ID" == *"ubuntu"* ]] || [[ "$ID" == *"debian"* ]] || [[ "$ID_LIKE" == *"ubuntu"* ]] || [[ "$ID_LIKE" == *"debian"* ]])
		then
			lpms=$i
			break
		elif [ "$i" == "dpkg" ]
		then
			lpms=$i
			break
		elif [[ "$ID_LIKE" == *"suse"* ]]
		then
			lpms=$i
			break
		elif [ "$i" == "pacman" ]
		then
			lpms=$i
			break
		fi
	fi
done

if [ -z $lpms ]; then
	echo
	echo "No supported package manager found"
	echo
	exit 0
fi

echo
echo "[+] Detected Package Manager: $lpms"

echo
echo "Done ✓"
echo "======================================================================="

##########
# Uninstall old versions
##########
echo
echo
echo "======================================================================="
echo "| Older versions of Docker were called docker, docker.io, or docker-engine."
echo "| If these are installed or all conflicting packages, uninstall them."
echo "======================================================================="
echo
sleep 2

# linux remove command for pms
if [ "$lpms" == "apk" ]
then
	sudo apk del docker podman-docker
elif [ "$lpms" == "dnf" ]
then
	sudo dnf -y remove podman-docker docker docker-client docker-client-latest docker-common docker-latest docker-latest-logrotate docker-logrotate docker-selinux docker-engine-selinux docker-engine
elif [ "$lpms" == "yum" ]
then
	sudo yum -y remove docker docker-client docker-client-latest docker-common docker-latest docker-latest-logrotate docker-logrotate docker-engine podman podman-docker runc
elif [ "$lpms" == "apt" ] || [ "$lpms" == "apt-get" ] || [ "$lpms" == "dpkg" ]
then
	for pkg in docker docker-engine docker.io docker-doc docker-compose docker-compose-v2 podman-docker containerd runc; do sudo $lpms -y remove $pkg; done
elif [ "$lpms" == "zypper" ]
then
	if [[ "$ID" == *"sles"* ]]
	then
		sudo zypper remove -y docker docker-client docker-client-latest docker-common docker-latest docker-latest-logrotate docker-logrotate docker-engine runc
	fi
elif [ "$lpms" == "pacman" ]
then
	sudo pacman -Rssn --noconfirm podman-docker podman-compose
else
	echo
	echo "No supported package manager found"
	echo
	exit 0
fi

echo
echo "Done ✓"
echo "======================================================================="

##########
# Install Docker
##########
echo
echo
echo "======================================================================="
echo "| Install Docker..."
echo "======================================================================="
echo
sleep 2

if [ "$lpms" == "apk" ]
then
	sudo apk update
	sudo apk add --update docker openrc bind-tools procps
	sudo rc-update add docker boot
	sudo service docker start
elif [ "$lpms" == "dnf" ]
then
	sudo dnf -y update
	sudo dnf -y install dnf-plugins-core yum-utils openssl-libs
	if [ "$ID" == "fedora" ] || ([ "$ID" == "rhel" ] && [ "$unamem" == "s390x" ])
	then
		sudo dnf config-manager addrepo --overwrite --from-repofile=https://download.docker.com/linux/$ID/docker-ce.repo
	elif [ "$ID" == "rhel" ] || [ "$id_like" == "rhel" ]
	then
		sudo dnf config-manager --add-repo https://download.docker.com/linux/rhel/docker-ce.repo
	else
		echo
		echo "unsupport operation system and/or architecture"
		echo
		exit 0
	fi
	sudo dnf -y install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin bind-utils
elif [ "$lpms" == "yum" ]
then
	sudo yum -y update
	sudo yum -y install yum-utils
	if [ "$ID" == "centos" ] || ([ "$ID" == "rhel" ] && [ "$unamem" == "s390x" ])
	then
		sudo yum-config-manager --add-repo https://download.docker.com/linux/$ID/docker-ce.repo
	elif [ "$id_like" == "rhel" ] || [ "$id_like" == "rhel" ]
	then
		sudo yum-config-manager --add-repo https://download.docker.com/linux/rhel/docker-ce.repo
	else
		echo
		echo "unsupport operation system and/or architecture"
		echo
		exit 0
	fi
	sudo yum -y install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin bind-utils
elif [ "$lpms" == "zypper" ]
then
	sudo zypper update -y
	sudo zypper install -y bind-utils
	if [[ "$ID" == *"sles"* ]] && [ "$unamem" == "s390x" ]
	then
		# "https://download.opensuse.org/repositories/security:/SELinux/openSUSE_Factory/security:SELinux.repo"
		sudo zypper addrepo "https://download.opensuse.org/repositories/security/$VERSION_ID/security.repo"
		sudo zypper addrepo https://download.docker.com/linux/sles/docker-ce.repo
		sudo zypper install -y docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin
	else
		sudo SUSEConnect -p sle-module-containers/$unames/$unamem -r ''
		sudo zypper install -y docker
	fi

	#Installed=`sudo zypper search --installed-only -v docker | sed -n '6p' | cut -c 28-40`
	#Candidate=`sudo zypper info docker | sed -n '10p' | cut -c 18-`
elif [ "$lpms" == "apt" ] || [ "$lpms" == "apt-get" ] || [ "$lpms" == "dpkg" ]
then
	sudo $lpms update
	sudo $lpms -y install ca-certificates curl gnupg lsb-release
	sudo mkdir -m 0755 /etc/apt/keyrings
	sudo curl -fsSL https://download.docker.com/linux/$operation_system/gpg | sudo gpg --batch --yes --dearmor -o /etc/apt/keyrings/docker.gpg
	sudo chmod a+r /etc/apt/keyrings/docker.gpg
	# Add the repository to Apt sources:
	echo "deb [arch=$(dpkg --print-architecture) signed-by=/etc/apt/keyrings/docker.gpg] https://download.docker.com/linux/$operation_system $codename stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null
	sudo $lpms update
	sudo $lpms -y install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin

	#Installed=`sudo apt-cache policy docker-ce | sed -n '2p' | cut -c 14-`
	#Candidate=`sudo apt-cache policy docker-ce | sed -n '3p' | cut -c 14-`
elif [ "$lpms" == "pacman" ]
then
	sudo pacman-key --init
	sudo pacman-key --populate
	sudo pacman -Syu --noconfirm
	sudo pacman -S --noconfirm docker docker-buildx bind-tools
else
	echo
	echo "No supported package manager found"
	echo
	exit 0
fi

#sudo apt install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin
#if [[ "$Installed" != "$Candidate" ]]; then
#	sudo apt-get install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin
#elif [[ "$Installed" == "$Candidate" ]]; then
#	echo
#	echo 'docker currently version already installed.'
#fi

if [ $? -ne 0 ]
then
	exit 0
fi

if ps -p 1 -o comm= | grep -q systemd
then
	sudo systemctl daemon-reload
fi

if [ $lpms != "apk" ]
then
	sudo systemctl enable docker.service
	sudo systemctl enable containerd.service
	sudo systemctl start docker
fi

echo
echo "Done ✓"
echo "======================================================================="

##########
# Run Docker without sudo rights
##########
echo
echo
echo "======================================================================="
echo "| Running Docker without sudo rights..."
echo "======================================================================="
echo
sleep 2

sudo groupadd docker
sudo usermod -aG docker ${USER}
# su - ${USER} &

echo
echo "Done ✓"
echo "======================================================================="

##########
# Install Docker Compose
##########
echo
echo
echo "======================================================================="
echo "| Installing Docker Compose v2.32.4..."
echo "======================================================================="
echo
sleep 2

sudo mkdir -p /usr/local/lib/docker/cli-plugins
sudo curl -SL "https://github.com/docker/compose/releases/download/v2.32.4/docker-compose-$unames-$unamem" -o /usr/local/lib/docker/cli-plugins/docker-compose
sudo chmod +x /usr/local/lib/docker/cli-plugins/docker-compose

echo
echo "Done ✓"
echo "======================================================================="

##########
# permission for Docker daemon socket
##########
echo
echo
echo "======================================================================="
echo "| permission for Docker daemon socket..."
echo "======================================================================="
echo
sleep 2

sudo chmod 666 /var/run/docker.sock

echo
echo "Done ✓"
echo "======================================================================="

clear
##########
# Setup project variables
##########
echo
echo "======================================================================="
echo "| Please enter project related variables..."
echo "======================================================================="
echo
sleep 2

# set the host
which_h=""
if [ -n "${SSH_CLIENT}" ] || [ -n "${SSH_TTY}" ] || [ -n "${SSH_CONNECTION}" ]; then
	echo "Running REMOTELY via SSH (on another host / remote OS)"
	which_h="remotehost"
else
	echo "Running LOCALLY on localhost (the same machine)"
	which_h="localhost"
fi
echo "Ok."

# set your domain name
domain_name=""
if [ "$which_h" == "localhost" ]
then
	read -p 'Enter Domain Name(default : localhost or e.g. : example.com): ' domain_name
	: ${domain_name:=localhost}
	[ "$domain_name" != "localhost" ] && sudo -- sh -c -e "grep -qxF '127.0.1.1  $domain_name' /etc/hosts || echo '127.0.1.1  $domain_name' >> /etc/hosts"
	ping -c 1 $domain_name 2>&1 > /dev/null
else
	#domain_name=""
	read -p 'Enter Domain Name(e.g. : example.com): ' domain_name
	#[ "$domain_name" != "localhost" ] && sudo -- sh -c -e "sed -i '/$domain_name/d' /etc/hosts"
	[ -z $domain_name ] && domain_name="NULL"
	host -N 0 $domain_name 2>&1 > /dev/null
fi
#[ -z $domain_name ] && domain_name="NULL"
#host -N 0 $domain_name 2>&1 > /dev/null
while [ $? -ne 0 ]
do
	echo "Try again"
	sudo -- sh -c -e "sed -i '/$domain_name/d' /etc/hosts"
	if [ "$which_h" == "localhost" ]
	then
		read -p 'Enter Domain Name(default : localhost or e.g. : example.com): ' domain_name
		: ${domain_name:=localhost}
		[ "$domain_name" != "localhost" ] && sudo -- sh -c -e "grep -qxF '127.0.1.1  $domain_name' /etc/hosts || echo '127.0.1.1  $domain_name' >> /etc/hosts"
		ping -c 1 $domain_name 2>&1 > /dev/null
	else
		read -p 'Enter Domain Name(e.g. : example.com): ' domain_name
		#[ "$domain_name" != "localhost" ] && sudo -- sh -c -e "sed -i '/$domain_name/d' /etc/hosts"
		[ -z $domain_name ] && domain_name="NULL"
		host -N 0 $domain_name 2>&1 > /dev/null
	fi
	#[ -z $domain_name ] && domain_name="NULL"
	#host -N 0 $domain_name 2>&1 > /dev/null
done
echo "Ok."

# set parameters in eprints create_pub_values.txt and env.example file
archive_id=""
regex="^[a-zA-Z][_a-zA-Z0-9]*$"
echo "Please select an ID for the repository, which will be used to create a directory and identify the repository. Lower case letters, numbers and underscores, may not start with a number or underscore. examples: 'lemurprints', 'test3' or 'research_archive'"
echo
read -p 'Enter Archive ID (default : depo): ' archive_id
: ${archive_id:=depo}
while [ -z $archive_id ] || [[ ! $archive_id =~ $regex ]]
do
	echo "Try again"
	read -p 'Enter Archive ID (default : depo): ' archive_id
	sleep 1
done
sudo rm $(pwd)/docker/create_pub_values.txt
sudo echo $archive_id > $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Configure vital settings? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

subdomain=""
regex="^[a-z0-9-]+(\.[a-z0-9-]+)*$"
read -p 'Enter Subdomain (default : repo): ' subdomain
: ${subdomain:=repo}
if [ "$which_h" == "localhost" ]
then
        sudo -- sh -c -e "grep -qxF '127.0.1.1  '$subdomain'.'$domain_name /etc/hosts || echo '127.0.1.1  '$subdomain'.'$domain_name >> /etc/hosts"
fi
while [ -z $subdomain ] || [[ ! $subdomain =~ $regex ]]
do
        echo "Try again"
        sudo -- sh -c -e "sed -i '/$subdomain/d' /etc/hosts"
        if [ "$which_h" == "localhost" ]
        then
                read -p 'Enter Subdomain (default: repo): ' subdomain
                sudo -- sh -c -e "grep -qxF '127.0.1.1  '$subdomain'.'$domain_name /etc/hosts || echo '127.0.1.1  '$subdomain'.'$domain_name >> /etc/hosts"
        else
                read -p 'Enter Subdomain (default: repo): ' subdomain
        fi
        sleep 1
done
# set parameter, Please enter the subdomain of the repository.
sudo echo "$subdomain.$domain_name" >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

ssl_snippet=""
if [ "$which_h" == "localhost" ]
then
	ssl_snippet="echo 'Generated Self-signed SSL Certificate at localhost'"
	if [ "$lpms" == "apk" ]
	then
		sudo apk add --no-cache nss-tools go
	elif [ "$lpms" == "dnf" ]
	then
		sudo dnf -y install nss-tools golang
	elif [ "$lpms" == "yum" ]
	then
		sudo yum -y install nss-tools golang
	elif [ "$lpms" == "zypper" ]
	then
		sudo zypper install -y mozilla-nss-tools go
	elif [ "$lpms" == "apt" ]
	then
		sudo apt -y install libnss3-tools golang
	elif [ "$lpms" == "pacman" ]
	then
		sudo pacman -S --noconfirm nss go
	else
		echo
		echo "No supported package manager found"
		echo
		exit 0
	fi
	sudo rm -Rf mkcert && git clone https://github.com/FiloSottile/mkcert &&
	cd ./mkcert
	sudo go build -ldflags "-X main.Version=$(git describe --tags)"
	./mkcert -uninstall && ./mkcert -install && ./mkcert -key-file privkey.pem -cert-file chain.pem $domain_name *.$domain_name && sudo cat privkey.pem chain.pem > fullchain.pem && sudo mkdir -p ../certbot/live/$domain_name && sudo mv *.pem ../certbot/live/$domain_name
	cd ..
	echo "Ok."
else
	ssl_snippet="certbot certonly --webroot --webroot-path \/tmp\/acme-challenge --rsa-key-size 4096 --non-interactive --agree-tos --no-eff-email --force-renewal --email \$\{LETSENCRYPT_EMAIL\} -d \$\{DOMAIN_NAME\} -d www.\$\{DOMAIN_NAME\} -d \$\{SUBDOMAIN\}.\$\{DOMAIN_NAME\}"
fi

# set parameter, Webserver Port [80]
sudo echo "80" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Alias for hostname, Alias (enter # when done) [#]
sudo echo "#" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Repository’s base URL, Path [/]
sudo echo "/" >> $(pwd)/docker/create_pub_values.txt

# set parameter, HTTPS Hostname []
sudo echo "$subdomain.$domain_name" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Secure webserver port, Secure Webserver Port [443]
sudo echo "443" >> $(pwd)/docker/create_pub_values.txt

# set parameters in env.example file and values eprints
email=""
regex="^[a-zA-Z0-9\._-]+\@[a-zA-Z0-9._-]+\.[a-zA-Z]+\$"
read -p 'Enter Email Address for letsencrypt ssl and administrator(e.g. : email@domain.com): ' email
while [ -z $email ] || [[ ! $email =~ $regex ]]
do
	echo "Try again"
	read -p 'Enter Email Address for letsencrypt ssl and administrator(e.g. : email@domain.com): ' email
	sleep 1
done
sudo echo $email >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Archive Name
echo "Enter the name of the repository in the default language. If you wish to enter other titles for other languages or enter non ascii characters then you may enter something as a placeholder and edit the XML config file which this script generates."
echo
read -p 'Enter Archive Name [Test Repository]: ' archive_name
: ${archive_name:=Test Repository}
while [ -z "$archive_name" ]
do
	echo "Try again"
	read -p 'Enter Archive Name [Test Repository]: ' archive_name
	sleep 1
done
sudo echo $archive_name >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Organisation Name
echo "Enter the name of the organisation in the default language. Again, if you wish to enter other titles for other languages or enter non ascii characters then you may enter something as a placeholder and edit the XML config file which this script generates."
echo
read -p 'Enter Organisation Name [Organisation of Test]: ' organisation_name
: ${organisation_name:=Organisation of Test}
while [ -z "$organisation_name" ]
do
	echo "Try again"
	read -p 'Enter Organisation Name [Organisation of Test]: ' organisation_name
	sleep 1
done
sudo echo $organisation_name >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Write these core settings? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Configure database? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

db_name=""
db_regex="^[0-9a-zA-Z\$_]{6,}$"
read -p 'Enter Database Name(at least 6 characters): ' db_name
while [[ ! $db_name =~ $db_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dollar sign and underscore)"
	read -p 'Enter Database Name(at least 6 characters): ' db_name
	sleep 1
done
# set parameter, Database Name
sudo echo $db_name >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, MySQL Host [localhost]
sudo echo "database" >> $(pwd)/docker/create_pub_values.txt

# set parameter, MySQL Port (# for no setting) [#]
sudo echo "3306" >> $(pwd)/docker/create_pub_values.txt

# set parameter, MySQL Socket (# for no setting) [#]
sudo echo "#" >> $(pwd)/docker/create_pub_values.txt

db_username=""
read -p 'Enter Database Username(at least 6 characters): ' db_username
while [[ ! $db_username =~ $db_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dollar sign and underscore)"
	read -p 'Enter Database Username(at least 6 characters): ' db_username
	sleep 1
done
# set parameter, Database User
sudo echo $db_username >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

db_password=""
password_regex="^[a-zA-Z0-9\._-]{6,}$"
read -p 'Enter Database Password(at least 6 characters): ' db_password
while [[ ! $db_password =~ $password_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dot, underscore and minus sign)"
	read -p 'Enter Database Password(at least 6 characters): ' db_password
	sleep 1
done
# set parameter, Database Password
sudo echo $db_password >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Database Engine [InnoDB]
sudo echo "InnoDB" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Write these database settings? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Create database [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

mysql_root_password=""
read -p 'Enter MariaDb/Mysql Root Password(at least 6 characters): ' mysql_root_password
while [[ ! $mysql_root_password =~ $password_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dot, underscore and minus sign)"
	read -p 'Enter MariaDb/Mysql Root Password(at least 6 characters): ' mysql_root_password
	sleep 1
done
# set parameter, Database Superuser Username
sudo echo "root" >> $(pwd)/docker/create_pub_values.txt
# set parameter, Database Superuser Password
sudo echo $mysql_root_password >> $(pwd)/docker/create_pub_values.txt
echo "Ok."

# set parameter, Create database tables? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Create an initial user? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Enter a username [admin]
sudo echo "admin" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Select a user type (user|editor|admin) [admin]
sudo echo "admin" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Enter Password for admin
sudo echo "admin123" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Enter Email for admin
sudo echo $email >> $(pwd)/docker/create_pub_values.txt

# set parameter, Do you want to build the static web pages? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Do you want to import the LOC subjects and sample divisions? [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

# set parameter, Do you want to update the apache config files? (you still need to add the 'Include' line) [yes]
sudo echo "yes" >> $(pwd)/docker/create_pub_values.txt

pma_username=""
read -p 'Enter PhpMyAdmin Username(at least 6 characters): ' pma_username
while [[ ! $pma_username =~ $db_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dollar sign and underscore)"
	read -p 'Enter PhpMyAdmin Username(at least 6 characters): ' pma_username
	sleep 1
done
echo "Ok."

pma_password=""
read -p 'Enter PhpMyAdmin Password(at least 6 characters): ' pma_password
while [[ ! $pma_password =~ $password_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, dot, underscore and minus sign)"
	read -p 'Enter PhpMyAdmin Password(at least 6 characters): ' pma_password
	sleep 1
done
echo "Ok."

which_db=""
db_authentication_password=$pma_password
db_package_manager="apt-get update \&\& apt-get install -y gettext-base"
db_admin_commandline="mariadb-admin"
db_client_library="mariadb-client libmariadb-dev"
PS3="Select the database: "
select db in mariadb mysql
do
	which_db=$db
	if [ $REPLY -eq 2 ]
	then
		db_package_manager="microdnf update -y \&\& microdnf install -y gettext"
		db_admin_commandline="mysqladmin"
		db_client_library="mysql-client libmysqlclient-dev"
	fi
	if [ $REPLY -eq 1 ] || [ $REPLY -eq 2 ]
	then
		break
	else
		PS3="Select the database: "
	fi
done
echo "Ok."

local_timezone_regex="^[a-zA-Z0-9/+_-]{1,}$"
read -p 'Enter container local Timezone(default : America/Los_Angeles, to see the other timezones, https://en.wikipedia.org/wiki/List_of_tz_database_time_zones#List): ' local_timezone
: ${local_timezone:=America/Los_Angeles}
while [[ ! $local_timezone =~ $local_timezone_regex ]]
do
	echo "Try again (can only contain numerals 0-9, basic Latin letters, both lowercase and uppercase, positive, minus sign and underscore)"
	read -p 'Enter container local Timezone(default : America/Los_Angeles, to see the other local timezones, https://en.wikipedia.org/wiki/List_of_tz_database_time_zones#List): ' local_timezone
	sleep 1
	: ${local_timezone:=America/Los_Angeles}
done
local_timezone=${local_timezone//[\/]/\\\/}
echo "Ok."

read -p "Apply changes (y/n)? " choice
case "$choice" in
  y|Y ) clear; echo; echo "Yes! Proceeding now...";;
  n|N ) echo "No! Aborting now..."; exit 0;;
  * ) echo "Invalid input! Aborting now..."; exit 0;;
esac

sudo \cp env.example .env

sed -i "s/db_package_manager/$db_package_manager/" .env
sed -i 's/db_admin_commandline/'$db_admin_commandline'/' .env
sed -i "s/db_client_library/$db_client_library/" .env
sed -i 's/example.com/'$domain_name'/' .env
sed -i 's/subdomain/'$subdomain'/' .env
sed -i 's/archive_id/'$archive_id'/' .env
sed -i 's/email@domain.com/'$email'/' .env
sed -i "s/ssl_snippet/$ssl_snippet/" .env
sed -i 's/which_db/'$which_db'/g' .env
sed -i 's/db_username/'$db_username'/g' .env
sed -i 's/db_password/'$db_password'/g' .env
sed -i 's/db_name/'$db_name'/' .env
sed -i 's/mysql_root_password/'$mysql_root_password'/' .env
sed -i 's/pma_username/'$pma_username'/' .env
sed -i 's/pma_password/'$pma_password'/' .env
sed -i "s@directory_path@$(pwd)@" .env
sed -i 's/local_timezone/'$local_timezone'/' .env

if [ -x "$(command -v docker)" ] && [ "$(docker compose version)" ]; then
	# Firstly: create external volume
	docker volume create --driver local --opt type=none --opt device=`pwd`/certbot --opt o=bind certbot-etc > /dev/null
	# installing EPrints and the other services
	docker compose up -d & export pid=$!
	echo "EPrints and the other services installing proceeding..."
	echo
	wait $pid
	if [ $? -eq 0 ]; then
		# installing portainer
		docker compose -f portainer-docker-compose.yml -p portainer up -d & export pid=$!
		echo
		echo "portainer installing proceeding..."
		wait $pid
		if [ $? -ne 0 ]
		then
			echo "Error! could not installed portainer" >&2
			exit 1
		else
			echo
			until [ -n "$(sudo find ./certbot/live -name '$domain_name' 2>/dev/null | head -1)" ]; do
				echo "waiting Let's Encrypt certificates for $domain_name"
				sleep 5s & wait ${!}
				if sudo [ -d "./certbot/live/$domain_name" ]; then break; fi
			done
			echo "Ok."
			#until [ ! -z `docker compose ps -a --filter "status=running" --services | grep webserver` ]; do
			#	echo "waiting starting webserver container"
			#	sleep 2s & wait ${!}
			#	if [ ! -z `docker compose ps -a --filter "status=running" --services | grep webserver` ]; then break; fi
			#done
			echo
			echo "Loading webserver ssl configuration"
			docker container restart webserver > /dev/null 2>&1
			echo "Ok."
			echo
			echo "completed setup"
			echo
			echo "EPrints: https://$subdomain.$domain_name"
			echo "Website: https://$domain_name"
			echo "Portainer: https://$domain_name:9001"
			echo "phpMyAdmin: https://$domain_name:9090"
			echo
			echo "Ok."
		fi
	else
		echo
		echo "Error! could not installed EPrints and the other services with docker compose" >&2
		echo
		exit 1
	fi
else
	echo
	echo "not found docker and/or docker compose, Install docker and/or docker compose" >&2
	echo
	exit 1
fi