nfcore/mrimorph is a bioinformatics pipeline used for the analysis of brain morphometry MRI imaging data.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
The nf-core/mrimorph pipeline comes with documentation about the pipeline, found in the docs/ directory:
- Installation
- Pipeline configuration
- Running the pipeline
- Output and how to interpret the results
- Troubleshooting
The pipeline was originally written by The Bioinformatics & Biostatistics Group in collaboration with Jonny Kohl, Patty Wai and Bernard Siow from The Francis Crick Institute, London and Ma Da from Simon Fraser University, British Columbia, Canada.
The pipeline was developed by Harshil Patel.
You can cite the nf-core pre-print as follows:
Ewels PA, Peltzer A, Fillinger S, Alneberg JA, Patel H, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. nf-core: Community curated bioinformatics pipelines. bioRxiv. 2019. p. 610741. doi: 10.1101/610741.