Skip to content

Add BulkSeq Studio to pipelines #159

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
tunabirgun wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Add BulkSeq Studio to pipelines #159

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -128,6 +128,7 @@ Package suites gather software packages and installation tools for specific lang
- **[Bactopia](https://github.com/bactopia/bactopia/)** - A flexible pipeline, built with Nextflow, for the complete analysis of bacterial genomes. [ [web](https://bactopia.github.io/) ]
- **[Bacannot](https://github.com/fmalmeida/bacannot)** - A generic but comprehensive bacterial annotation pipeline, built with Nextflow, with nice graphical options for investigating results. [ [web](https://bacannot.readthedocs.io/en/latest/?badge=latest) ]
- **[bcbio-nextgen](https://github.com/chapmanb/bcbio-nextgen)** - Batteries included genomic analysis pipeline for variant and RNA-Seq analysis, structural variant calling, annotation, and prediction. [ [web](https://bcbio-nextgen.readthedocs.io) ]
- **[BulkSeq Studio](https://github.com/tunabirgun/bulkseq-studio)** - Cross-platform desktop application with a no-code interface and a reproducible Snakemake workflow for bulk RNA-seq and microarray analysis. [ [web](https://tunabirgun.github.io/bulkseq-studio/) ]
- **[R-Peridot](https://github.com/pentalpha/r-peridot)** - Customizable pipeline for differential expression analysis with an intuitive GUI. [ [web](http://www.bioinformatics-brazil.org/r-peridot) ]
- **[ngs-preprocess](https://github.com/fmalmeida/ngs-preprocess)** - A pipeline for preprocessing short and long sequencing reads, built with Nextflow. [ [web](https://ngs-preprocess.readthedocs.io/en/latest/?badge=latest) ]

Expand Down