-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathsimplified_combiSV.vcf
More file actions
26 lines (26 loc) · 2.09 KB
/
Copy pathsimplified_combiSV.vcf
File metadata and controls
26 lines (26 loc) · 2.09 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
##fileformat=VCFv4.2
##source=combiSV-v2.2
##fileDate=Sun Sep 24 16:02:35 2023
##contig=<ID=DQ657948.1,length=272677>
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=INS,Description="Insertion">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=SVCALLERS,Number=.,Type=String,Description="SV callers that support this SV">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# High-quality reference reads">
##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# High-quality variant reads">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample
DQ657948.1 22619 id.1 N <INS> . PASS SVTYPE=INS;SVLEN=48;END=22619;SVCALLERS=cutesv,NanoSV GT:DR:DV 0/1:172:205
DQ657948.1 37878 id.2 N <INS> . PASS SVTYPE=INS;SVLEN=78;END=37879;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:21:385
DQ657948.1 49267 id.3 N <DEL> . PASS SVTYPE=DEL;SVLEN=75;END=49343;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:179:192
DQ657948.1 76047 id.4 N <DEL> . PASS SVTYPE=DEL;SVLEN=66;END=76114;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:194:172
DQ657948.1 91153 id.5 N <INS> . PASS SVTYPE=INS;SVLEN=84;END=91154;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:139:144
DQ657948.1 143510 id.6 N <DEL> . PASS SVTYPE=DEL;SVLEN=96;END=143605;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:10:299
DQ657948.1 155453 id.7 N <DEL> . PASS SVTYPE=DEL;SVLEN=66;END=155512;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 1/1:2:365
DQ657948.1 177652 id.8 N <DEL> . PASS SVTYPE=DEL;SVLEN=76;END=177646;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:3:341
DQ657948.1 216551 id.9 N <INS> . PASS SVTYPE=INS;SVLEN=81;END=216552;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:141:194
DQ657948.1 228209 id.10 N <INS> . PASS SVTYPE=INS;SVLEN=74;END=228198;SVCALLERS=Sniffles,cutesv,NanoSV GT:DR:DV 0/1:146:214