Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
fls-bioinformatics-core
/
auto_process_ngs
Public
Notifications
You must be signed in to change notification settings
Fork
6
Star
10
Code
Issues
69
Pull requests
2
Actions
Projects
Wiki
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Wiki
Security and quality
Insights
Actions: fls-bioinformatics-core/auto_process_ngs
Actions
All workflows
Workflows
Dependency Graph
Dependency Graph
Python CI
Python CI
Show more workflows...
Management
Caches
Python CI
Python CI
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Show workflow options
Create status badge
Create status badge
Loading
Uh oh!
There was an error while loading.
Please reload this page
.
python-ci.yml
will be ignored since log searching is not yet available
499 workflow runs
499 workflow runs
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
applications: update the 10x Chromium 3' OCM applications.
Python CI
#2370:
Commit
31cb113
pushed by
pjbriggs
52m 57s
10x-ocm-data-add-qc-protocol
10x-ocm-data-add-qc-protocol
52m 57s
View workflow file
Merge pull request #1168 from fls-bioinformatics-core/10x-updating-ha…
Python CI
#2369:
Commit
9de4534
pushed by
pjbriggs
52m 48s
devel
devel
52m 48s
View workflow file
Merge pull request #1167 from fls-bioinformatics-core/qc-report-refac…
Python CI
#2368:
Commit
ce47b81
pushed by
pjbriggs
51m 27s
devel
devel
51m 27s
View workflow file
Update 10x Chromium 3' OCM application support and add new QC protocol
Python CI
#2367:
Pull request
#1169
opened by
pjbriggs
52m 3s
10x-ocm-data-add-qc-protocol
10x-ocm-data-add-qc-protocol
52m 3s
View #1169
View workflow file
applications: update the 10x Chromium 3' OCM applications.
Python CI
#2366:
Commit
a71e61d
pushed by
pjbriggs
52m 2s
10x-ocm-data-add-qc-protocol
10x-ocm-data-add-qc-protocol
52m 2s
View workflow file
Updating specifying 10x single nuclei data in QC pipeline
Python CI
#2365:
Pull request
#1168
opened by
pjbriggs
51m 43s
10x-updating-handling-of-single-nuclei-data-in-qc
10x-updating-handling-of-single-nuclei-data-in-qc
51m 43s
View #1168
View workflow file
qc/protocols: update '10x_scRNAseq' and '10x_Multiome_GEX' protocols.
Python CI
#2364:
Commit
b93c3b0
pushed by
pjbriggs
51m 31s
10x-updating-handling-of-single-nuclei-data-in-qc
10x-updating-handling-of-single-nuclei-data-in-qc
51m 31s
View #1168
View workflow file
Refactor table generation in QC reports
Python CI
#2363:
Pull request
#1167
synchronize by
pjbriggs
51m 50s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
51m 50s
View #1167
View workflow file
qc/reporting: fix duplicated 'sample' column in 10x multiplexing table.
Python CI
#2362:
Commit
fb31234
pushed by
pjbriggs
51m 56s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
51m 56s
View #1167
View workflow file
Refactor table generation in QC reports
Python CI
#2361:
Pull request
#1167
synchronize by
pjbriggs
51m 55s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
51m 55s
View #1167
View workflow file
qc/reporting: remove unused argument on '_init_summary_section' metho…
Python CI
#2360:
Commit
d33044a
pushed by
pjbriggs
51m 18s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
51m 18s
View workflow file
Refactor table generation in QC reports
Python CI
#2359:
Pull request
#1167
opened by
pjbriggs
50m 50s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
50m 50s
View #1167
View workflow file
qc/reporting: drop redundant 'report_program_versions' method from Fa…
Python CI
#2358:
Commit
28a82a7
pushed by
pjbriggs
51m 22s
qc-report-refactor-table-generation
qc-report-refactor-table-generation
51m 22s
View workflow file
Merge pull request #1166 from fls-bioinformatics-core/qc-reporting-re…
Python CI
#2357:
Commit
70c2bab
pushed by
pjbriggs
51m 32s
devel
devel
51m 32s
View workflow file
Refactor processing software table in QC reporting
Python CI
#2356:
Pull request
#1166
opened by
pjbriggs
50m 55s
qc-reporting-refactor-processing-software-table
qc-reporting-refactor-processing-software-table
50m 55s
View #1166
View workflow file
qc/reporting: remove __bool__ method from 'ProcessingSoftwareTable' c…
Python CI
#2355:
Commit
53ead3f
pushed by
pjbriggs
51m 7s
qc-reporting-refactor-processing-software-table
qc-reporting-refactor-processing-software-table
51m 7s
View #1166
View workflow file
Merge pull request #1165 from fls-bioinformatics-core/qc-report-inclu…
Python CI
#2354:
Commit
fa9290c
pushed by
pjbriggs
51m 7s
devel
devel
51m 7s
View workflow file
Include barcode IDs for multiplexed samples in 10x multiplexing analysis table in QC reports
Python CI
#2353:
Pull request
#1165
opened by
pjbriggs
51m 31s
qc-report-include-barcodes-for-10x-multiplexed-samples
qc-report-include-barcodes-for-10x-multiplexed-samples
51m 31s
View #1165
View workflow file
qc/reporting: include barcode IDs in 10x multiplexing analysis table.
Python CI
#2352:
Commit
69fec41
pushed by
pjbriggs
51m 48s
qc-report-include-barcodes-for-10x-multiplexed-samples
qc-report-include-barcodes-for-10x-multiplexed-samples
51m 48s
View #1165
View workflow file
Merge pull request #1164 from fls-bioinformatics-core/version-0.66.0
Python CI
#2351:
Commit
48c0169
pushed by
pjbriggs
51m 38s
0.66.0
0.66.0
51m 38s
View workflow file
Merge pull request #1164 from fls-bioinformatics-core/version-0.66.0
Python CI
#2350:
Commit
48c0169
pushed by
pjbriggs
50m 25s
master
master
50m 25s
View workflow file
Merge pull request #1164 from fls-bioinformatics-core/version-0.66.0
Python CI
#2349:
Commit
48c0169
pushed by
pjbriggs
51m 36s
devel
devel
51m 36s
View workflow file
auto-process-ngs version 0.66.0
Python CI
#2348:
Pull request
#1164
opened by
pjbriggs
51m 18s
version-0.66.0
version-0.66.0
51m 18s
View #1164
View workflow file
Bump version to 0.66.0.
Python CI
#2347:
Commit
fa53b9f
pushed by
pjbriggs
52m 2s
version-0.66.0
version-0.66.0
52m 2s
View #1164
View workflow file
Merge pull request #1163 from fls-bioinformatics-core/qc-report-fix-1…
Python CI
#2346:
Commit
f096e96
pushed by
pjbriggs
50m 8s
devel
devel
50m 8s
View workflow file
Previous
1
2
3
4
5
6
…
19
20
Next
You can’t perform that action at this time.