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Merge pull request #1181 from fls-bioinformatics-core/run_qc.py-defau… Python CI #2420: Commit cee7f86 pushed by pjbriggs

52m 36s devel

devel

52m 36s

Merge pull request #1180 from fls-bioinformatics-core/auto_process-de… Python CI #2419: Commit aa53a6e pushed by pjbriggs

51m 4s devel

devel

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Merge pull request #1179 from fls-bioinformatics-core/transfer_data-s… Python CI #2418: Commit 4458a29 pushed by pjbriggs

53m 5s devel

devel

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Create conda environments under the analysis directory by default for 'make_fastqs' & 'run_qc' Python CI #2417: Pull request #1180 synchronize by pjbriggs

52m 21s auto_process-default-conda-env-dir-in-analysis-dir

auto_process-default-conda-env-dir-in-analysis-dir

52m 21s

'run_qc': fix default location of conda envs in previous commit. Python CI #2416: Commit 212092d pushed by pjbriggs

53m 3s auto_process-default-conda-env-dir-in-analysis-dir

auto_process-default-conda-env-dir-in-analysis-dir

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'run_qc.py': create conda environments under working directory by default Python CI #2415: Pull request #1181 opened by pjbriggs

53m 21s run_qc.py-default-conda-envs-in-working-dir

run_qc.py-default-conda-envs-in-working-dir

53m 21s

cli.run_qc.py: make conda environments under working directory by def… Python CI #2414: Commit 89c62a7 pushed by pjbriggs

52m 27s run_qc.py-default-conda-envs-in-working-dir

run_qc.py-default-conda-envs-in-working-dir

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Create conda environments under the analysis directory by default for 'make_fastqs' & 'run_qc' Python CI #2413: Pull request #1180 opened by pjbriggs

51m 44s auto_process-default-conda-env-dir-in-analysis-dir

auto_process-default-conda-env-dir-in-analysis-dir

51m 44s

'run_qc': create conda environments under analysis directory by default. Python CI #2412: Commit 4c7150b pushed by pjbriggs

52m 55s auto_process-default-conda-env-dir-in-analysis-dir

auto_process-default-conda-env-dir-in-analysis-dir

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'transfer_data.py': add option to shorten shared filenames Python CI #2411: Pull request #1179 synchronize by pjbriggs

52m 16s transfer_data-shorten-shared-filenames

transfer_data-shorten-shared-filenames

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cli.transfer_data.py: add tests for '--short_names' & fiz bug in ZIP … Python CI #2410: Commit a93b7a6 pushed by pjbriggs

53m 15s transfer_data-shorten-shared-filenames

transfer_data-shorten-shared-filenames

53m 15s

'transfer_data.py': add option to shorten shared filenames Python CI #2409: Pull request #1179 opened by pjbriggs

52m 46s transfer_data-shorten-shared-filenames

transfer_data-shorten-shared-filenames

52m 46s

cli.transfer_data.py: add project name to summary output. Python CI #2408: Commit 27aceb0 pushed by pjbriggs

52m 10s transfer_data-shorten-shared-filenames

transfer_data-shorten-shared-filenames

52m 10s

Merge pull request #1178 from fls-bioinformatics-core/version-0.67.2 Python CI #2407: Commit 30db538 pushed by pjbriggs

52m 17s 0.67.2

0.67.2

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Merge pull request #1178 from fls-bioinformatics-core/version-0.67.2 Python CI #2406: Commit 30db538 pushed by pjbriggs

53m 57s master

master

53m 57s

Merge pull request #1178 from fls-bioinformatics-core/version-0.67.2 Python CI #2405: Commit 30db538 pushed by pjbriggs

51m 0s devel

devel

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auto-process-ngs version 0.67.2 Python CI #2404: Pull request #1178 opened by pjbriggs

51m 56s version-0.67.2

version-0.67.2

51m 56s

Bump version to 0.67.2. Python CI #2403: Commit 5a52c41 pushed by pjbriggs

53m 1s version-0.67.2

version-0.67.2

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Merge pull request #1177 from fls-bioinformatics-core/fix-archive-fro… Python CI #2402: Commit 4c823c5 pushed by pjbriggs

50m 30s devel

devel

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'archive' command: fix bugs setting group & logging when archiving to 'final' from 'staging' Python CI #2401: Pull request #1177 synchronize by pjbriggs

54m 26s fix-archive-from-pending-to-final

fix-archive-from-pending-to-final

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'archive': fix bug with logging file for 'staging' to 'final' archive. Python CI #2400: Commit 2eb35bb pushed by pjbriggs

51m 14s fix-archive-from-pending-to-final

fix-archive-from-pending-to-final

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'archive' command: fix bugs setting group & logging when archiving to 'final' from 'staging' Python CI #2399: Pull request #1177 opened by pjbriggs

51m 47s fix-archive-from-pending-to-final

fix-archive-from-pending-to-final

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'archive' command: fix bug when archiving to final from staging. Python CI #2398: Commit a14797e pushed by pjbriggs

51m 21s fix-archive-from-pending-to-final

fix-archive-from-pending-to-final

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Merge pull request #1176 from fls-bioinformatics-core/bugfix-qc-pipel… Python CI #2397: Commit d0c409e pushed by pjbriggs

52m 9s devel

devel

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QC pipeline: bugfix when handling projects where organism name contains whitespace Python CI #2396: Pull request #1176 synchronize by pjbriggs

56m 26s bugfix-qc-pipeline-handle-organism-names-with-spaces

bugfix-qc-pipeline-handle-organism-names-with-spaces

56m 26s