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1 parent 1dcb622 commit 018bb5fCopy full SHA for 018bb5f
1 file changed
auto_process_ngs/tenx/metrics.py
@@ -425,11 +425,12 @@ def reads_in_cells(self):
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"""
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Returns the number of reads in cells
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- try:
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- # Cellranger 10
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- return self.fetch('Number of reads in cells')
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- except MissingMetricError:
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- pass
+ # Cellranger 10
+ for library_type in ("Gene Expression", "Antibody Capture"):
+ try:
+ return self.fetch('Number of reads in cells', library_type)
+ except (KeyError, MissingMetricError):
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+ pass
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try:
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# Cellranger <= 9
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return self.fetch('Number of reads from cells called from this sample')
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