Thank you for this very useful tool. I find the merge function is very efficient in merge a large number of files. However, I find a small inconvenience when working on the merged vcf file, which is about this line :
fprintf(file, "%s", "##INFO=<ID=SUPP,Number=1,Type=String,Description=\"Number of samples supporting the variant\">\n");
So in the merged vcf, the SUPP is a string which cannot be filterd with SUPP>3 with bcftools. The problem is sometimes the merged vcf file is very large, in my case, it's about 88G. To manually edite this is quite slow. Would you please modify the type for SUPP to Integer?
Thank you!
Thank you for this very useful tool. I find the merge function is very efficient in merge a large number of files. However, I find a small inconvenience when working on the merged vcf file, which is about this line :
fprintf(file, "%s", "##INFO=<ID=SUPP,Number=1,Type=String,Description=\"Number of samples supporting the variant\">\n");So in the merged vcf, the SUPP is a string which cannot be filterd with SUPP>3 with bcftools. The problem is sometimes the merged vcf file is very large, in my case, it's about 88G. To manually edite this is quite slow. Would you please modify the type for SUPP to Integer?
Thank you!