actions.yml

name: Actions for gnomad_python_api
on: [push]
jobs:
  build_and_run:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.6, 3.7, 3.8]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
    - name: Test a single transcript
      run: |
        # Test the script by retrieving a transcript data
        python gnomad_api_cli.py -filter_by=gene_name -search_by="BRCA1" -dataset="gnomad_r2_1" -sv_dataset="gnomad_sv_r2_1"