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Copy pathprocessing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
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29 lines (25 loc) · 2.39 KB
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{
"PreProcessingForVariantDiscovery_GATK4.sample_name": "NA12878",
"PreProcessingForVariantDiscovery_GATK4.ref_name": "hg38",
"PreProcessingForVariantDiscovery_GATK4.flowcell_unmapped_bams_list": "gs://gatk-test-data/wgs_ubam/NA12878_24RG/NA12878_24RG_small.txt",
"PreProcessingForVariantDiscovery_GATK4.unmapped_bam_suffix": ".bam",
"PreProcessingForVariantDiscovery_GATK4.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",
"PreProcessingForVariantDiscovery_GATK4.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta",
"PreProcessingForVariantDiscovery_GATK4.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai",
"PreProcessingForVariantDiscovery_GATK4.ref_alt": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.alt",
"PreProcessingForVariantDiscovery_GATK4.ref_sa": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.sa",
"PreProcessingForVariantDiscovery_GATK4.ref_amb": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.amb",
"PreProcessingForVariantDiscovery_GATK4.ref_bwt": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.bwt",
"PreProcessingForVariantDiscovery_GATK4.ref_ann": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.ann",
"PreProcessingForVariantDiscovery_GATK4.ref_pac": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.64.pac",
"PreProcessingForVariantDiscovery_GATK4.dbSNP_vcf": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dbsnp138.vcf",
"PreProcessingForVariantDiscovery_GATK4.dbSNP_vcf_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dbsnp138.vcf.idx",
"PreProcessingForVariantDiscovery_GATK4.known_indels_sites_VCFs": [
"gs://gcp-public-data--broad-references/hg38/v0/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz",
"gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.known_indels.vcf.gz"
],
"PreProcessingForVariantDiscovery_GATK4.known_indels_sites_indices": [
"gs://gcp-public-data--broad-references/hg38/v0/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz.tbi",
"gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.known_indels.vcf.gz.tbi"
]
}