chore(deps): merge upstream dev-dependency version bumps

main moved forward with several Dependabot PRs while this branch was
open (rich <15->16, ipython <9->10, pdoc <15->17, pytest-cov <6->8, ruff
<0.16.3->0.16.5, #827-#831), all touching the same dev/cli dependency
lists this branch's own changes (drop perflint, add pre-commit, ruff
ignore-list edits, [tool.mypy]) live in. Applied the version bumps by
hand instead of merging main in, to keep this branch's history linear
and each reconciled file its own reviewable commit -- verified the
result now differs from origin/main's pyproject.toml by exactly this
branch's own intentional changes, nothing left over.

uv.lock regeneration is its own following commit.

Author: schneiderfelipe

pyproject.toml

@@ -51,7 +51,7 @@ dependencies = [
 ]
 
 [project.optional-dependencies]
-cli = ["rich>=13,<15"]
+cli = ["rich>=13,<16"]
 fast = [
     "jax>=0.4",
     "jaxlib>=0.4",
@@ -75,17 +75,17 @@ overreact = "overreact._cli:main"
 dev = [
     "debugpy>=1,<2",
     "flynt>=0.77,<1.1",
-    "ipython>=8,<9",
+    "ipython>=8,<10",
     "jupyter>=1.0.0,<2",
     "matplotlib>=3,<4",
     "mypy>=0.991,<2.4",
-    "pdoc>=12,<15",
+    "pdoc>=12,<17",
     "pre-commit>=3,<5",
     "pytest>=7.2,<10.0",
-    "pytest-cov>=4,<6",
-    "rich>=13,<15",
+    "pytest-cov>=4,<8",
+    "rich>=13,<16",
     "thermo>=0.2",
-    "ruff>=0.0.210,<0.16.3",
+    "ruff>=0.0.210,<0.16.5",
     "seaborn>=0.12,<0.14",
     "types-setuptools>=65,<84",
 ]