GetVcfSampleQcData

GetVcfSampleQcData

The get vcf sample qc data API is used for retrieving the vcf qc statistics. Sample must have coverage statistics available.

URL:

https://analysis.geneyx.com/api/GetVcfSampleQcData

China Domain:

https://fa.shanyint.com/api/GetVcfSampleQcData

Action:

POST

Payload:

JSON Structure

Table

Category	Parameter	Description	Required
Auth	ApiUserId	The API user Id	Yes
	ApiUserKey	The API user key	Yes
Sample	sampleSn	The vcf serial ID	Yes

Example

{
    "ApiUserKey": "enter api key",
    "ApiUserId": "enter api ID",
    "sampleSn": "Sample3b"
}

Response

{
    "Code": "success",
    "Data": {
        "ID": "a5cc8bc9-8533-4823-961d-ad0449fdf679",
        "PassedReadsNum": 28383320,
        "FailedReadsNum": 0,
        "MappedReadsNum": 28348040,
        "PairedReadsNum": 28383320,
        "MeanCoverage": 61.54,
        "Percent5x": 95.84,
        "Percent20x": 90.78,
        "Percent50x": 60.3,
        "BedFilePosNum": 38098418,
        "AvrAlignCoverage": 23667627.0,
        "AlignedReads": 23667627
    },
    "Info": null,
    "MoreInfo": null,
    "NeedEval": false
}