UpdateSampleQc

UpdateSampleSequencingQc

This script is used to update the sample qc data.

URL:

https://analysis.geneyx.com/api/UpdateSampleQc

China Domain:

https://fa.shanyint.com/api/UpdateSampleQc

Action:

POST

Payload:

JSON Structure

Table

Category	Parameter	Description	Required
Auth	ApiUserId	The API user Id	Yes
	ApiUserKey	The API user key	Yes
Sample	SampleSerialNumber	The VCF serial ID	Yes
	SampleTakenDate	Sample taken date yyyy/mm/dd	No
	SampleSequenceDate	Sample sequencing date yyyy/mm/dd	No
	SampleReceivedDate	Sample Received Dateyyyy/mm/dd	No
	SampleType	May be one of the following: RnaSeq, DnaSeq	No
	SampleTarget	May be one of the following: WholeGenome, Exome, GenePanel, TargetRegion	No
	SampleSource	May be one of the following: Germline, Tumor, Blood, Buccal, Fetal, Saliva, Other	No
	SampleNotes	Sample Notes	No
	SampleGenomeBuild	Maybe one of the following: hg19, hg38	No
	SampleQcData	Sample QC Data, such as gene coverage, in JSON format	No
	SubjectName	Name of Subject	No
	SubjectGender	M, or F	No
	SubjectDateOfBirth	Date of birth of subject yyyy/mm/dd	No
	SampleNotes	Sample Notes	No
	SubjectHasBioSample	Bio sample available	No
	SubjectUseConsentPersonal	Personal consent	No
	SubjectUseConsentClinical	Clinical consent	No
	SkipAnnotation	true or false, will not annotate the sample if true	No

Example

{
  "SampleSerialNumber": "DNA23644.dragen.wgs.hg38.20220904-211745",
  "SampleTakenDate": "2022-12-27",
  "SampleSequenceDate": "2022-12-27",
  "SampleReceivedDate": "2022-12-27",
  "SampleType": "Blood",
  "SampleTarget": "exome",
  "SampleSource": "germline",
  "SampleNotes": "Clinical description",
  "SampleGenomeBuild": "hg19",
  "SampleQcData": "{\"genes\": {\"AARS1\": 100.0, \"ZNF469\": 100.0, \"ZNF513\": 100.0, \"ZNF526\": 100.0, \"ZNF592\": 100.0,\"ZSWIM6\": 96.84}}",
  "SubjectId": " DNA23644",
  "SubjectName": "Example",
  "SubjectGender": "Male",
  "SubjectDateOfBirth": "2022-12-27",
  "SubjectHasBioSample": true,
  "SubjectUseConsentPersonal": true,
  "SubjectUseConsentClinical": true,
  "SkipAnnotation": true,
  "ApiUserId": "xxx",
  "ApiUserKey": "xxx"
}

Response

{
    "Code": "success",
    "Data": "Done",
    "Info": null,
    "MoreInfo": null,
    "NeedEval": false
}