UpdateSampleSequencingQc

UpdateSampleSequencingQc

Allows the user to update Sequencing QC information for the given sample on the VCF sample display screen (QC Data section) manually

URL:

https://analysis.geneyx.com/api/UpdateSampleSequencingQc

China Domain:

https://fa.shanyint.com/api/UpdateSampleSequencingQc

Action:

POST

Payload:

JSON Structure

Table

Category	Parameter	Description	Required
Auth	ApiUserId	The API user Id	Yes
	ApiUserKey	The API user key	Yes
Sample	sampleSn	The vcf serial ID	Yes
	FailedReadsNum	Number of reads that failed	Yes
	MappedReadsNum	Number of mapped reads	Yes
	PairedReadsNum	Number of paired reads	Yes
	MeanCoverage	Mean sample coverage	Yes
	Percent5x	Percent coverage at 5X	Yes
	Percent20x	Percent Coverage at 20X	Yes
	Percent50x	Percent Coverage at 50X	Yes

Example

{
  "sampleSn": "14082.Dragen.Wes.Hg19.11101103-151618.Vcf.Gz",  
  "PassedReadsNum": 1,
  "FailedReadsNum": 2,
  "MappedReadsNum": 30,
  "PairedReadsNum": 4,
  "MeanCoverage": 5.1,
  "Percent5x": 6.1,
  "Percent20x": 7.1,
  "Percent50x": 8.1,
  "BedFilePosNum": 9,
  "AvrAlignCoverage": 10,
  "AlignedReads": 11,
  "BiallelicCount": 4816423,
  "BiallelicPercentage": 18.6,
  "ChrXSnpsCount": 15,
  "TotalVariants": 4909967,
  "MultiallelicCount": 93544,
  "MultiallelicPercentage": 6.3,
  "SnpCount": 3949368,
  "SnpPercentage": 5.4,
  "TotalHeteroCount": 2964732,
  "TotalHeterPercentage": 7.3,
  "TotalHomoCount": 1835495,
  "TotalHomoPercentage": 5.1,
  "HetHomRatio": 1.62,
  "ChrXSnpsPercentage": 31.35,
  "ChrYSnpsCount": 88295,
  "ChrYSnpsPercentage": 10.1,
  "XySnpsRatio": 22.48
}

Response

{
  "Code": "success",
  "Data": "Done",
  "Info": null,
  "MoreInfo": null,
  "NeedEval": false
}