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Removed FSC-dependent gates when nu_refine=yes, so shellwalk actually…
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flex with mask note for Afan
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Post-cutover sigma2 cleanup
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add FFT-based Buccaneer-inspired C-alpha detection with ranked candid…
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PCG: discard a replay start worse than zero; INIT= in the solve summa…
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ditching the PCG warm-starts
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work on masked NU refinement
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making rec_backend=pcg and rec_backend=gridding comparable for side-b…
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dead code removal; if you miss anything it is in the Git history to b…
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Retire nu_input (gridding|ml): the base pair is the NU competition input
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Restore lagged canonical sigma visibility at reconstruction boundaries
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NU competition: like-for-like label selection, nu_input=ml, uncapped …
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FSC=0.143 cap in NU machinery and option to use gridding volumes in P…
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attempt to resolve PfCRT issues
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updated pcg_priors note
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work on sigma_store=canonical and bootstrap_rec3D
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bootstrap_rec3D bugfix
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iteration budget and low-pass limit update changes to match the most …
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sigma2 tidying
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res05 in ori
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added forgotten files\
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put back the competition NU experiment for PCG. The prior did not gen…
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freq march/mask edits based on msp1/streptav testing
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added forgotten files
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canonical sigma2 refactoring ready for testing with sigma_store=canon…
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