Prepare release 26.6 (OpenFUSIONToolkit#297)

- Update versioning scheme to year-based
 - Update publications list
 - Update examples

Author: hansec

README.md

@@ -14,8 +14,7 @@ framework, for problems in plasma and fusion research and engineering in arbitra
 The underlying framework and its component tools support the use of variable order finite element methods on
 unstructured tetrahedral (triangular) or hexahedral (quadralateral) grids.
 
-**NOTE:** This project is current in a beta status as the transition to a fully open source code, including
-associated documentation and examples is completed. For more information see [v1.0 release status](https://github.com/openfusiontoolkit/OpenFUSIONToolkit/milestone/1) for more information.
+**NOTE:** This project is under active development, please watch [releases](https://github.com/openfusiontoolkit/OpenFUSIONToolkit/releases) for any new features and breaking changes that may be introduced.
 
 Component tools
 ------------
@@ -51,6 +50,6 @@ See [CONTRIBUTING.md](https://github.com/openfusiontoolkit/OpenFUSIONToolkit/blo
 Copyright
 ---------
 
-Open FUSION Toolkit code development project, up to version 1.0 Copyright (c) 2023, Open FUSION Toolkit team.
+Open FUSION Toolkit code development project, up to version 26.6 Copyright (c) 2023 - 2026, Open FUSION Toolkit team.
 
 Written by Open FUSION Toolkit team and collaborators with Christopher J. Hansen as principle developer. All rights reserved.

spack/repo/packages/openfusiontoolkit/package.py

@@ -12,7 +12,7 @@ class Openfusiontoolkit(CMakePackage):
     framework, for problems in plasma and fusion research and engineering in arbitrary 2D and 3D geometries.
     The underlying framework and its component tools support the use of variable order finite element methods on
     unstructured tetrahedral (triangular) or hexahedral (quadralateral) grids.
-    
+
     Component tools:
       - TokaMaker: A time-dependent free-boundary Grad-Shafranov equilibrium code
       - ThinCurr: A 3D thin-wall electromagnetic simulation package
@@ -21,17 +21,17 @@ class Openfusiontoolkit(CMakePackage):
 
     # Project and repo information
     homepage = "https://openfusiontoolkit.github.io/OpenFUSIONToolkit/"
-    url = "https://github.com/OpenFUSIONToolkit/OpenFUSIONToolkit/archive/refs/tags/v1.0.0-beta6.tar.gz"
+    url = "https://github.com/OpenFUSIONToolkit/OpenFUSIONToolkit/archive/refs/tags/v26.6.tar.gz"
     git = "https://github.com/OpenFUSIONToolkit/OpenFUSIONToolkit.git"
     maintainers("hansec")
     license("LGPL-3.0-only", checked_by="hansec")
 
     # CMakeLists.txt is in the src/ directory
     root_cmakelists_dir = "src"
 
-    # Version list supported by spack build (needs 1.0.0-beta8 or newer)
+    # Version list supported by spack build (needs 26.6 or newer)
     version("main", branch="main")
-    # version("1.0.0-beta8", sha256="d687c788f05118e88b3bcb78c14fbf726286b5359b122ecdb9829fc26084f3c4") # FIXME: Uncomment and update hash when available
+    # version("26.6", sha256="d687c788f05118e88b3bcb78c14fbf726286b5359b122ecdb9829fc26084f3c4") # FIXME: Uncomment and update hash when available
 
     # Build variants
     variant("build_type",default="Release",description="The build type to build",values=("Debug", "Release"))

src/CMakeLists.txt

@@ -4,9 +4,9 @@
 # SPDX-License-Identifier: LGPL-3.0-only
 ########################
 cmake_minimum_required( VERSION 3.27 )
-project( OpenFUSIONToolkit LANGUAGES NONE VERSION "1.0.0" )
-set( OFT_VER_SUFFIX "-beta7" CACHE INTERNAL "Version suffix" )
-set( OFT_PYPI_VER_SUFFIX "${OFT_VER_SUFFIX}" CACHE INTERNAL "Version suffix for PYPI (needs to be pep440)" )
+project( OpenFUSIONToolkit LANGUAGES NONE VERSION "26.6" )
+set( OFT_VER_SUFFIX "" CACHE INTERNAL "Version suffix" )
+set( OFT_PYPI_VER_SUFFIX "" CACHE INTERNAL "Version suffix for PYPI (needs to be pep440)" )
 list( APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_LIST_DIR}/cmake" )
 
 option(OFT_BUILD_TESTS "Build tests?" OFF)
@@ -47,7 +47,7 @@ if(OFT_PACKAGE_BUILD AND OFT_PACKAGE_NIGHTLY)
     WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
     OUTPUT_VARIABLE GIT_COMMIT_COUNT
     OUTPUT_STRIP_TRAILING_WHITESPACE)
-  set( OFT_PYPI_VER_SUFFIX "${OFT_VER_SUFFIX}.dev${GIT_COMMIT_COUNT}" CACHE INTERNAL "Version suffix for PYPI (needs to be pep440)" FORCE )
+  set( OFT_PYPI_VER_SUFFIX ".dev${GIT_COMMIT_COUNT}" CACHE INTERNAL "Version suffix for PYPI (needs to be pep440)" FORCE )
   execute_process(
     COMMAND git rev-parse --short HEAD
     WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}

src/docs/ThinCurr/doc_thincurr_main.md

@@ -10,6 +10,9 @@ flowing in thin conducting structures (2D sheets in 3D geometry)
 
 \f[ \mathrm{L} \frac{\partial I}{\partial t} + \mathrm{R} I = V. \f]
 
+ThinCurr should primarily be used through the python interface using the \ref OpenFUSIONToolkit.ThinCurr "OpenFUSIONToolkit.ThinCurr" python module
+and the \ref OpenFUSIONToolkit.ThinCurr._core.ThinCurr "OpenFUSIONToolkit.ThinCurr.ThinCurr" class.
+
 \section doc_tw_main_ex ThinCurr Examples
 The following examples illustrate usage of ThinCurr to perform calculations using the thin-wall model.
 

src/docs/build_doc_versions.sh

@@ -26,7 +26,7 @@ echo $CURR_RELEASE >> doc_versions.txt
 MENU_PATCH+='{text:"'$CURR_RELEASE'",url:"'../$CURR_RELEASE'/index.html"},'
 
 # Build previous releases (explicitly set for now)
-for verTag in v1.0.0-beta6 v1.0.0-beta5 v1.0.0-beta4 v1.0.0-beta3 ;
+for verTag in v1.0.0-beta7 v1.0.0-beta6 ;
 do
     git checkout $verTag
     mkdir $verTag && cd $verTag

src/docs/website/publications.html

@@ -24,6 +24,20 @@ <h2 id="project_tagline">An open-source framework for fusion and plasma science
         <h2>Publications</h2>
         <p>A list of publications using the Open FUSION Toolkit. To be added to this list please <a href="https://github.com/openfusiontoolkit/OpenFUSIONToolkit/issues">open an issue</a> or create a pull request.</p>
         <ol class="ref_list">
+          <li>M. Pharr et al., <a href="https://arxiv.org/abs/2606.02901">Coordinate-invariant flux-surface Fourier analysis in tokamaks</a>, <em>arXiv:2606.02901</em> (2026)</li>
+          <li>The CENTAUR Collaboration et al., <a href="https://arxiv.org/abs/2605.27549">Compact Experimental Negative TriAngUlarity Reactor (CENTAUR): A design study for a compact, affordable breakeven tokamak</a>, <em>arXiv:2605.27549</em> (2026)</li>
+          <li>S. Guizzo et al., <a href="http://dx.doi.org/10.2139/ssrn.6828994">Flexible, Axisymmetric MHD Solver for Coupled Plasma and Flowing, Conducting Blanket Dynamics</a>, <em>SSRN Preprint</em> (2026)</li>
+          <li>S. Sarkar et al., <a href="https://arxiv.org/abs/2605.09913">Magnetohydrodynamic equilibrium and neutronics study on MAST-U using Jenga framework</a>, <em>arXiv:2605.09913</em> (2026)</li>
+          <li>J. Cohen et al., <a href="https://arxiv.org/abs/2605.04190">Yinsen: A low power density HTS tokamak fusion reactor for marine and off-grid applications</a>, <em>arXiv:2605.04190</em> (2026)</li>
+          <li>K. Yasoda et al., <a href="https://arxiv.org/abs/2605.00165">Characterization of ELM Pacing via Vertical Jogs on DIII-D</a>, <em>arXiv:2605.00165</em> (2026)</li>
+          <li>E.M. Bursch et al., <a href="https://arxiv.org/abs/2604.27317">Improved n=1 Empirical Error Field Penetration Threshold Scaling with Ohmic and L-Mode Conventional Tokamak Plasma Discharges</a>, <em>arXiv:2604.27317</em> (2026)</li>
+          <li>R. Gupta et al., <a href="https://arxiv.org/abs/2603.11549">Design and mechanical analysis of the PRAGYA tokamak vacuum vessel</a>, <em>arXiv:2603.11549</em> (2026)</li>
+          <li>D. Burgess et al., <a href="https://doi.org/10.1088/1361-6587/ae7156">Tearing Stability Prediction Combining Toroidal Calculations With a Two-Fluid Slab Layer</a>, <em>Plasma Physics & Controlled Fusion</em> <strong>68</strong>, 065017 (2026)</li>
+          <li>J. Salm et al., <a href="https://doi.org/10.1063/5.0332786">Poloidal field coils optimization in tokamaks using TokaMaker</a>, <em>AIP Advances</em> <strong>16</strong>, 065113 (2026)</li>
+          <li>J. Hillesheim et al., <a href="https://doi.org/10.1017/S0022377826101706">Overview of the physics basis for the ARC fusion power plant</a>, <em>Journal of Plasma Physics</em> <strong>92(3)</strong>, E69 (2026)</li>
+          <li>R. Sweeney et al., <a href="https://doi.org/10.1017/S0022377826101585">ARC Disruption Physics and Strategy</a>, <em>Journal of Plasma Physics</em> <strong>92(3)</strong>, E68 (2026)</li>
+          <li>N. Leuthold et al., <a href="https://doi.org/10.1017/S0022377826101421">ARC Physics Basis - MHD</a>, <em>Journal of Plasma Physics</em> <strong>92(2)</strong>, E49 (2026)</li>
+          <li>H. Sun et al., <a href="https://doi.org/10.1088/1361-6587/ae4a4a">Physics of the low momentum diffusivity regime in tokamaks and its experimental applicability</a>, <em>Plasma Physics & Controlled Fusion</em> <strong>68</strong>, 035011 (2026)</li>
           <li>S. Benjamin et al., <a href="https://doi.org/10.1088/1741-4326/ae44ad">Macroscopic trends of neoclassical tearing stability in high-field H-mode tokamak pilot plants</a>, <em>Nuclear Fusion</em> <strong>66</strong>, 036049 (2026)</li>
           <li>A. Braun et al., <a href="https://doi.org/10.1088/1741-4326/ae4041">Validation of Runaway Electron Mitigation Coil Electromagnetic Modeling in the HBT-EP Tokamak</a>, <em>Nuclear Fusion</em> <strong>66</strong>, 036036 (2026)</li>
           <li>M. Parsons et al., <a href="https://doi.org/10.1088/1361-6587/ae3ada">A Data-Driven Approach to Real-Time Vertical Position Estimation for NSTX-U Vertical Stability Control</a>, <em>Plasma Physics & Controlled Fusion</em> <strong>68</strong>, 025008 (2026)</li>