There are two branches on every TAF stock assessment repository:
tafuser
The taf branch holds the official version of the code and results. The data
and plots on this branch have been created on the ICES TAF server using the
following commands:
clean()
source.all()This ensures that the files found in the data, output, and report folders
have been created on the TAF server and are therefore considered reproducible.
The user branch holds the code (and potentially the results) uploaded by the
TAF user. Currently there are no restrictions on what files are uploaded to the
user branch.
A clean and simple TAF analysis has a user branch containing only files that
are retained after a cleanup:
clean()