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Difficulty generating a colored PCA plot using gg_pca() with metadata

Status: Open.

#67 In iferres/pagoo;

· MarquesMat opened on Sep 10, 2025

issue with "ord <- hclust(dist(t(p$pan_matrix[, names(hload) ])))$order"

Status: Open.

#66 In iferres/pagoo;

· sushanta26 opened on Sep 19, 2024

Change Shell and Cloud levels

Status: Open.

#65 In iferres/pagoo;

· alegione opened on Jan 5, 2024

Is it possible to run panaroo_2_pagoo without removing "refound_"?

Status: Open.

#64 In iferres/pagoo;

· emilywollmuth opened on Oct 2, 2023

Failing to process gene_presence_absence.csv file

Status: Open.

#63 In iferres/pagoo;

· LovaRandriantseheno opened on Apr 30, 2023

Is there a function pagoo_2_roary ?

Status: Open.

#58 In iferres/pagoo;

· diaspj opened on Sep 28, 2022

Remove metadata option

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#54 In iferres/pagoo;

· g1o opened on Nov 30, 2021

Add Willenbrock et al. 2007 coregenome fit function

Status: Open.

#52 In iferres/pagoo;

· iferres opened on Aug 16, 2021

Improve internal ggplot2 functions handling

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In iferres/pagoo;

· iferres opened on Feb 19, 2021

Implement $drop(hard = TRUE)

enhancementNew feature or requestNew feature or request

Status: Open.

#47 In iferres/pagoo;

· iferres opened on Jan 18, 2021

Re-assign genes to other clusters

enhancementNew feature or requestNew feature or request

low-priorityPotential enhancement but not todayPotential enhancement but not today

Status: Open.

#46 In iferres/pagoo;

· iferres opened on Nov 25, 2020

Add phylo object as metadata

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In iferres/pagoo;

· iferres opened on Nov 25, 2020