sleep-ST/.pre-commit-config.yaml at main · ignaciolinari/sleep-ST · GitHub

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# Pre-commit configuration for sleep-ST
# Runs basic hygiene + Python formatting/lint + notebook checks
# Docs: https://pre-commit.com/

# Exclude large data and cache folders
exclude: |
  ^(data/|tmp/|.venv/|.mypy_cache/|.pytest_cache/|.ruff_cache/|.git/)

repos:
  # Generic file checks
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.6.0
    hooks:
      - id: check-yaml
      - id: check-json
      - id: check-toml
      - id: end-of-file-fixer
      - id: trailing-whitespace
      - id: mixed-line-ending
      - id: detect-private-key
      - id: check-added-large-files
        args: ["--maxkb=500"]  # Warn if files > 500KB
      - id: check-merge-conflict

  # Ruff for Python linting/formatting (fast)
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.6.9
    hooks:
      - id: ruff
        args: ["--fix"]
      - id: ruff-format

  # Type checking with mypy
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.11.2
    hooks:
      - id: mypy
        args: ["--ignore-missing-imports", "--no-strict-optional"]
        # Exclude data/tmp folders and notebooks
        exclude: ^(data/|tmp/|notebooks/)

  # Security linting with bandit
  - repo: https://github.com/PyCQA/bandit
    rev: 1.7.9
    hooks:
      - id: bandit
        args: ["-ll", "-i"]  # Low/Medium severity, skip .gitignore files
        exclude: ^(data/|tmp/|notebooks/)

  # nbQA to run tools on Jupyter Notebooks
  - repo: https://github.com/nbQA-dev/nbQA
    rev: 1.9.0
    hooks:
      - id: nbqa-ruff
        additional_dependencies: ["ruff==0.6.9"]
        args: ["--fix"]
      - id: nbqa-ruff-format
        additional_dependencies: ["ruff==0.6.9"]