Error with the installation with MLED

[walukf]

I have been trying to install mled on R 4.3.3 in order to run energy requirement analyses in Zambia but I keep running into installation errors such as:

1. Package Installation Fails (Permission Issue)

When running source("backend.R"), the script attempts to install packages (pacman, Rcpp) to the system-level library:
Warning: 'lib = "C:/Program Files/R/R-4.3.3/library"' is not writable
Error in install.packages("pacman") : unable to install packages
Even after setting .libPaths() to a user-writable location, backend.R still attempts to install to the system library.

2. Rcpp Download Fails
   When loading backend.R, I receive the following warning:
   Warning: unable to access index for repository https://rcppcore.github.io/drat/bin/windows/contrib/4.3:
   cannot open URL ...
   This prevents Rcpp from being installed.

3. find_it() Function Missing
   When running calculate_rates_for_baseline.R, the following error occurs:
   Error in find_it("sdg-7.1.1-access_to_electricity.xlsx") :
   could not find function "find_it"
   I searched for this function in the M-LED codebase but didn’t find a definition. It appears to be custom, but it's not sourced by default.

-Steps Already Taken

Set .libPaths("C:/Users/presentation/Documents/R/win-library/4.3")

Installed pacman, readxl, and Rcpp manually to personal library

Used lib.loc to load packages

Attempted to source possible helper files (functions.R, utils.R)

  Requesting for help as I fear introducing changes to code that would change intention of how the platform is meant to behave.

[giacfalk]

Thanks for opening the issue, I will be looking into it over the next couple of days

[giacfalk]

@walukf can you please post the console output when you select all the content of the mled/MLED_hourly.r scipt and you press run in RStudio?

[walukf]

Here are the outputs after running the entirety of MLED_hourly.r in one go:

##------ Mon Aug 25 17:27:21 2025 ------##
Loading required package: pacman
Loading required package: Rcpp
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5/PACKAGES'
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5/PACKAGES'
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.5/PACKAGES'
Loading required package: rgis
Loading required package: fasterize

Attaching package: ‘fasterize’

The following object is masked from ‘package:graphics’:

plot

The following object is masked from ‘package:base’:

plot

Loading required package: gdalUtils
Downloading GitHub repo gearslaboratory/gdalUtils@HEAD
Skipping 1 packages not available: rgdal
── R CMD build ─────────────────────────────────────────────────────────────────

✔ checking for file 'C:\Users\presentation\AppData\Local\Temp\RtmpEb06Iz\remotes45dc38d052f5\gearslaboratory-gdalUtils-8872aaf/DESCRIPTION' (642ms)

─ preparing 'gdalUtils': (1.7s)
checking DESCRIPTION meta-information ...

✔ checking DESCRIPTION meta-information

─ checking for LF line-endings in source and make files and shell scripts (419ms)

─ checking for empty or unneeded directories

─ building 'gdalUtils_2.0.3.2.tar.gz' (1.3s)

ERROR: dependency 'rgdal' is not available for package 'gdalUtils'
Perhaps try a variation of:
install.packages('rgdal')

• removing 'C:/Users/presentation/AppData/Local/Programs/R/R-4.5.1/library/gdalUtils'
  Error in library(gdalUtils) : there is no package called ‘gdalUtils’
  In addition: There were 12 warnings (use warnings() to see them)

warning ()
Warning message:

warnings()
Warning message:

[giacfalk]

I see. There seems to be an issue with the M-LED code since rgdal was recently retired and removed from CRAN. This requires me to update the code of M-LED to get rid of this dependency, which I will do but it will take some time. In the meantime, I encourage you to downgrade to R version 4.3 and install rgdal using devtools::install_cran("https://cran.r-project.org/src/contrib/Archive/rgdal/rgdal_1.6-7.tar.gz")

[walukf]

Thank you for your response @giacfalk, I have scaled back to the usage of R4.3.3 for the installation of M-LED. I am receiving less errors in my installation attempts in comparison to those of R4.5.1. I am still receiving errors in failure to install certain relevant packages, I am happy to report I successfully installed the RCPP package which might indicate my package installation errors could be rectified with the correct CRAN mirror so that is not a major concern. My concern though is still in the failure to locate the 'find it' function which still does not exist in sdg-7.1.1-access_to_electricity.xlsx.

Portion of errors received in which find_it could not be accessed:

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'https://cloud.r-project.org/bin/windows/contrib/4.3/lwgeom_0.2-14.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'https://cloud.r-project.org/bin/windows/contrib/4.3/lwgeom_0.2-14.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘lwgeom’ failed
Error in plan(cluster, workers = cl) : could not find function "plan"
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘lwgeom’
3: In pacman::p_load(sf, raster, exactextractr, dplyr, readxl, cowplot, :
Failed to install/load:
sf, raster, exactextractr, tidyverse, rgeos, gdalUtils, nngeo, strex, mapdata, maptools, stars, gdistance, rasterVis, stars, wbstats, stars, terra, caret, dissever, geojsonio, future.apply, geodata, lwgeom

source("calculate_rates_for_baseline.R", local=F)
Error in find_it("sdg-7.1.1-access_to_electricity.xlsx") :
could not find function "find_it"

Your guidance would be appreciated.

[giacfalk]

Dear @walukf,

I have just completed updating the mled code to get rid of old, unsupported dependencies and migrate the raster files processing to the terra environment.

Could you please reinstall the platform from scratch and let me know if everything now works fine?

Your tester role will be very appreciated by the community.

[walukf]

Hello @giacfalk thank you very much.
I have downloaded the entire platform from scratch and attempted reinstalling mled using both R4.5.1 and R4.3.1in which both scenerios the installation was unsuccessful with the errors:

######################

load modules and database

timestamp()
##------ Mon Sep 8 20:42:18 2025 ------##
source("backend.R")
Loading required package: pacman
Loading required package: Rcpp
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 5.3 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘terra’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 7.4 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘sf’
3: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
4: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/raster_3.6-32.zip'
Content type 'application/zip' length 3703488 bytes (3.5 MB)
downloaded 3.5 MB

package ‘raster’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

raster installed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 8.3 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 1.1 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘terra’
3: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
4: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/exactextractr_0.10.0.zip'
Content type 'application/zip' length 1690967 bytes (1.6 MB)
downloaded 653 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/exactextractr_0.10.0.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/exactextractr_0.10.0.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘exactextractr’ failed

exactextractr installed
Failed with error: ‘package ‘sf’ required by ‘nngeo’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 2.6 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/nngeo_0.4.8.zip'
Content type 'application/zip' length 523038 bytes (510 KB)
downloaded 510 KB

package ‘nngeo’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

nngeo installed
Failed with error: ‘package ‘sf’ required by ‘nngeo’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/mapdata_2.3.1.zip'
Content type 'application/zip' length 25640858 bytes (24.5 MB)
downloaded 388 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/mapdata_2.3.1.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/mapdata_2.3.1.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘mapdata’ failed
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘mapdata’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 1.0 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip'
Content type 'application/zip' length 4570152 bytes (4.4 MB)
downloaded 917 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘stars’ failed

stars installed
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
Failed with error: ‘package ‘raster’ could not be loaded’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘terra’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 1.5 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/gdistance_1.6.4.zip'
Content type 'application/zip' length 1475902 bytes (1.4 MB)
downloaded 1.4 MB

package ‘gdistance’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

gdistance installed
Failed with error: ‘package ‘raster’ could not be loaded’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘terra’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There are binary versions available but the source versions are later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE
rasterVis 0.51.6 0.51.7 FALSE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 1.4 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
installing the source package ‘rasterVis’

trying URL 'http://cran.rstudio.com/src/contrib/rasterVis_0.51.7.tar.gz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'http://cran.rstudio.com/src/contrib/rasterVis_0.51.7.tar.gz'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/src/contrib/rasterVis_0.51.7.tar.gz': status was 'Couldn't resolve host name'
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘rasterVis’ failed

rasterVis installed
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 344 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip'
Content type 'application/zip' length 4570152 bytes (4.4 MB)
downloaded 2.1 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘stars’ failed

stars installed
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
In addition: Warning messages:
1: package ‘wbstats’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
2: 'BiocManager' not available. Could not check Bioconductor.

Please use install.packages('BiocManager') and then retry.
3: In p_install(package, character.only = TRUE, ...) :
4: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘wbstats’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 982 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip'
Content type 'application/zip' length 4570152 bytes (4.4 MB)
downloaded 919 KB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/stars_0.6-8.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘stars’ failed

stars installed
Failed with error: ‘package ‘sf’ required by ‘stars’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 1.4 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘sparsevctrs’, ‘recipes’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There are binary versions available but the source versions are later:
binary source needs_compilation
sparsevctrs 0.3.2 0.3.4 TRUE
recipes 1.2.1 1.3.1 FALSE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sparsevctrs_0.3.2.zip'
Content type 'application/zip' length 201743 bytes (197 KB)
downloaded 197 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/caret_7.0-1.zip'
Content type 'application/zip' length 3580452 bytes (3.4 MB)
downloaded 3.4 MB

package ‘sparsevctrs’ successfully unpacked and MD5 sums checked
package ‘caret’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages
installing the source package ‘recipes’

trying URL 'http://cran.rstudio.com/src/contrib/recipes_1.3.1.tar.gz'
Content type 'application/x-gzip' length 889576 bytes (868 KB)
downloaded 868 KB

• installing source package 'recipes' ...
  ** package 'recipes' successfully unpacked and MD5 sums checked
  ** using staged installation
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
  there is no package called 'future.apply'
  Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
  ERROR: lazy loading failed for package 'recipes'
• removing 'C:/Users/presentation/AppData/Local/R/win-library/4.3/recipes'

The downloaded source packages are in
‘C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages’

caret installed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/dissever_0.2-3.zip'
Content type 'application/zip' length 587754 bytes (573 KB)
downloaded 573 KB

package ‘dissever’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

dissever installed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 1.7 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘terra’
3: In utils::install.packages(package, ...) :
installation of package ‘recipes’ had non-zero exit status
4: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
5: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/geojsonio_0.11.3.zip'
Content type 'application/zip' length 948990 bytes (926 KB)
downloaded 926 KB

package ‘geojsonio’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

geojsonio installed
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘parallelly’, ‘future’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There are binary versions available but the source versions are later:
binary source needs_compilation
parallelly 1.43.0 1.45.1 TRUE
future 1.34.0 1.67.0 FALSE
future.apply 1.11.3 1.20.0 FALSE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/parallelly_1.43.0.zip'
Content type 'application/zip' length 597030 bytes (583 KB)
downloaded 583 KB

package ‘parallelly’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages
installing the source packages ‘future’, ‘future.apply’

trying URL 'http://cran.rstudio.com/src/contrib/future_1.67.0.tar.gz'
Content type 'application/x-gzip' length 442676 bytes (432 KB)
downloaded 432 KB

trying URL 'http://cran.rstudio.com/src/contrib/future.apply_1.20.0.tar.gz'
Content type 'application/x-gzip' length 74695 bytes (72 KB)
downloaded 72 KB

• installing source package 'future' ...
  ** package 'future' successfully unpacked and MD5 sums checked
  ** using staged installation
  ** R
  ** demo
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
  namespace 'parallelly' 1.43.0 is being loaded, but >= 1.44.0 is required
  Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
  Execution halted
  ERROR: lazy loading failed for package 'future'
• removing 'C:/Users/presentation/AppData/Local/R/win-library/4.3/future'
  ERROR: dependency 'future' is not available for package 'future.apply'
• removing 'C:/Users/presentation/AppData/Local/R/win-library/4.3/future.apply'

The downloaded source packages are in
‘C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages’
Failed with error: ‘package ‘terra’ required by ‘geodata’ could not be found’
In addition: Warning messages:
1: In utils::install.packages(package, ...) :
installation of package ‘future’ had non-zero exit status
2: In utils::install.packages(package, ...) :
installation of package ‘future.apply’ had non-zero exit status
3: In p_install(package, character.only = TRUE, ...) :
4: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘future.apply’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘terra’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
terra 1.8-29 1.8-60 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip'
Content type 'application/zip' length 40018618 bytes (38.2 MB)
downloaded 3.2 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/terra_1.8-29.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘terra’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/geodata_0.6-2.zip'
Content type 'application/zip' length 241509 bytes (235 KB)
downloaded 235 KB

package ‘geodata’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpc76zCt\downloaded_packages

geodata installed
Failed with error: ‘package ‘terra’ required by ‘geodata’ could not be found’
Installing package into ‘C:/Users/presentation/AppData/Local/R/win-library/4.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘sf’

Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3:
cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/4.3/PACKAGES'

There is a binary version available but the source version is later:
binary source needs_compilation
sf 1.0-20 1.0-21 TRUE

Binaries will be installed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip'
Content type 'application/zip' length 39717342 bytes (37.9 MB)
downloaded 3.6 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/sf_1.0-20.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘sf’ failed
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/lwgeom_0.2-14.zip'
Content type 'application/zip' length 10130270 bytes (9.7 MB)
downloaded 1.2 MB

Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'http://cran.rstudio.com/bin/windows/contrib/4.3/lwgeom_0.2-14.zip' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 0 != reported length 0
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'http://cran.rstudio.com/bin/windows/contrib/4.3/lwgeom_0.2-14.zip': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘lwgeom’ failed
Error in plan(cluster, workers = cl) : could not find function "plan"
In addition: Warning messages:
1: In p_install(package, character.only = TRUE, ...) :
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘lwgeom’
3: In pacman::p_load(sf, raster, terra, exactextractr, dplyr, readxl, :
Failed to install/load:
sf, raster, terra, exactextractr, nngeo, mapdata, stars, gdistance, rasterVis, stars, wbstats, stars, terra, caret, dissever, geojsonio, future.apply, geodata, lwgeom

######################

scenarios

ssp <- c("ssp2", "ssp2", "ssp2") # list SSP scenarios (socio-economic development) to run
rcp <- c("rcp60", "rcp60", "rcp26") # list RCP scenarios (climate change) to run

r <- readLines(paste0("country_scenarios/scenario_", countrystudy, ".R"))[17]; source(textConnection(r))
r2 <- readLines(paste0("country_scenarios/scenario_", countrystudy, ".R"))[30]; source(textConnection(r2))

el_access_share_target <- c(national_official_elrate, 1, 1) # target share of population with electricity in the last planning year
irrigated_cropland_share_target <- c(cropland_equipped_irrigation, .5, .75) # target share of rainfed cropland irrigation water demand met in the last planning year
crop_processed_share_target <- c(0.1, .5, .75) #target share of crop yield locally processed in the last planning year

calibrate baseline targets

write(paste0(timestamp(), "starting calibration module n2"), "log.txt", append=T)
##------ Mon Sep 8 21:15:08 2025 ------##
source("calculate_rates_for_baseline.R", local=F)
Error in find_it("sdg-7.1.1-access_to_electricity.xlsx") :
could not find function "find_it"

scenarios <- data.frame(ssp = ssp, rcp = rcp, el_access_share_target=el_access_share_target, irrigated_cropland_share_target=irrigated_cropland_share_target, crop_processed_share_target=crop_processed_share_target, stringsAsFactors = F)

scenarios[,3:4] <- round(scenarios[,3:4], 3)

rownames(scenarios) <- c("baseline", "improved_access", "ambitious_development") # name the scenarios

Most of the errors originate from the failure to load packages as well as the same error from failure to find function 'find_it' function. Maybe there could be a way to manually download these packages separately.

[giacfalk]

Seems like the problem is your internet connection (or a firewall) - RStudio does not manage to download packages from the internet! Could you try another internet connection or another computer?

Just to make sure try to type:

install.packages("sf") in a fresh Rstudio session and let me know if if works

[walukf]

Okay, I preemptively ran install.packages("sf") before the rest of the script and this is the current output:

MLED - Multi-sectoral Latent Electricity Demand assessment platform

v0.2 (LEAP_RE)

24/08/2023

system parameters

setwd("C:/Users/presentation/Documents/Project TW/Extracted/RE4AFAGRI_platform-main/mled") # path of the cloned M-LED GitHub repository

db_folder = 'C:/Users/presentation/Documents/Project TW/Extracted/input_folder' # path to (or where to download) the M-LED database [must be an existing path]

email<- "giacomo.falchetta@gmail.com"

download_data <- F # flag: download the M-LED database? Type "F" if you already have done so previously.

allowparallel=T # allows paralellised processing. considerably shortens run time but requires computer with large CPU cores # (e.g. >=8 cores) and RAM (e.g. >=16 GB)

######################

country and year

countrystudy <- c("zambia") # country(ies) to run M-LED on
exclude_countries <- paste(gsub("\.r", "",gsub("scenario_", "", basename(list.files(pattern="scenario_", recursive = T))), ignore.case = T)[! gsub("\.r", "",gsub("scenario_", "", basename(list.files(pattern="scenario_", recursive = T))), ignore.case = T) %in% c(countrystudy)], collapse ="|") # countries in the database files to exclude from the current run

planning_year = seq(2020, 2060, 10) # time steps and horizon year to make projections

######################

options and constriants

latent_d_tot <- F # estimate evolution of demand given current (and projected) electricity access rates (if FALSE) OR total LATENT DEMAND (DEMAND If EVERYBODY HAD SUDDEN ACCESS TO ELECTRICITY, if TRUE)

watercrop_unit <- "m3" # unit of water demand for irrigation, from Watercrop

no_productive_demand_in_small_clusters <- F # remove any type of productive use of energy in clusters below the "pop_threshold_productive_loads" parameter value

buffers_cropland_distance <- T # do not include agricultural loads from cropland distant more than n km (customisable in scenario file) from cluster centroid

field_size_contraint <- T # consider only small farmland patches (smallholder farming)

process_already_irrigated_crops <- T # crop processing: include energy demand to process yield in already irrigated land

groundwater_sustainability_contraint <- F # impose limit on groundwater pumping based on monthly recharge

water_tank_storage <- T # water storage is possible

######################

load modules and database

timestamp()
##------ Tue Sep 9 09:50:47 2025 ------##
source("backend.R")
Loading required package: pacman
Loading required package: Rcpp
Loading required package: rgis
Spherical geometry (s2) switched off

######################

scenarios

ssp <- c("ssp2", "ssp2", "ssp2") # list SSP scenarios (socio-economic development) to run
rcp <- c("rcp60", "rcp60", "rcp26") # list RCP scenarios (climate change) to run

r <- readLines(paste0("country_scenarios/scenario_", countrystudy, ".R"))[17]; source(textConnection(r))
r2 <- readLines(paste0("country_scenarios/scenario_", countrystudy, ".R"))[30]; source(textConnection(r2))

el_access_share_target <- c(national_official_elrate, 1, 1) # target share of population with electricity in the last planning year
irrigated_cropland_share_target <- c(cropland_equipped_irrigation, .5, .75) # target share of rainfed cropland irrigation water demand met in the last planning year
crop_processed_share_target <- c(0.1, .5, .75) #target share of crop yield locally processed in the last planning year

calibrate baseline targets

write(paste0(timestamp(), "starting calibration module n2"), "log.txt", append=T)
##------ Tue Sep 9 09:50:58 2025 ------##
source("calculate_rates_for_baseline.R", local=F)
Error in find_it("sdg-7.1.1-access_to_electricity.xlsx") :
Cannot find file

scenarios <- data.frame(ssp = ssp, rcp = rcp, el_access_share_target=el_access_share_target, irrigated_cropland_share_target=irrigated_cropland_share_target, crop_processed_share_target=crop_processed_share_target, stringsAsFactors = F)

scenarios[,3:4] <- round(scenarios[,3:4], 3)

rownames(scenarios) <- c("baseline", "improved_access", "ambitious_development") # name the scenarios

[giacfalk]

Can you just run install.packages("sf") in an empty RStudio session (without M-LED) and post what comes out in the console, please?

[walukf]

install.packages("sf")
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cloud.r-project.org/bin/windows/contrib/4.5/sf_1.0-21.zip'
Content type 'application/zip' length 44893398 bytes (42.8 MB)
downloaded 42.8 MB

package ‘sf’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\presentation\AppData\Local\Temp\Rtmpmgk7Ti\downloaded_packages

[giacfalk]

Ok, so it seems to work now! Try running:

pacman::p_load(sf, raster, terra, exactextractr, dplyr, readxl, cowplot, ggplot2, scales, tidyr, tidyverse, chron, nngeo, strex, data.table, gdata, FactoMineR, factoextra, maps , mapdata, grid, randomForestSRC, countrycode, remotes, stars, gdistance, rgl, rasterVis, qlcMatrix, stars, tvm, gtools, wbstats, stars, patchwork, ggrepel, terra, pbapply, googledrive, nnet, caret, randomForest, beepr, ncdf4, s2, zip, sfsmisc, dissever, gam, lsa, doBy, geojsonio, matrixStats, purrr, future.apply, parallel, doParallel, qdapRegex, geodata, lwgeom)

[walukf]

Packages ran successfully

[walukf]

pacman::p_load(sf, raster, terra, exactextractr, dplyr, readxl, cowplot, ggplot2, scales, tidyr, tidyverse, chron, nngeo, strex, data.table, gdata, FactoMineR, factoextra, maps , mapdata, grid, randomForestSRC, countrycode, remotes, stars, gdistance, rgl, rasterVis, qlcMatrix, stars, tvm, gtools, wbstats, stars, patchwork, ggrepel, terra, pbapply, googledrive, nnet, caret, randomForest, beepr, ncdf4, s2, zip, sfsmisc, dissever, gam, lsa, doBy, geojsonio, matrixStats, purrr, future.apply, parallel, doParallel, qdapRegex, geodata, lwgeom)