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brain-atlas: add pituitary, pineal, gyrus rectus, uvula of vermis
These exist in Z-Anatomy but were dropped by the exporter: the pituitary (adeno/neurohypophysis) and pineal gland are filed under "Endocrine glands" outside the Brain collection and also hit the gland/non-neural filter; the gyrus rectus and uvula of vermis are brain tissue wrongly caught by that filter's "rectus" / "uvula" substrings. - in_scope now keeps anything under the Brain collection before the non-neural filter runs (that filter targets cranial-nerve-supplied muscles, not brain tissue), rescuing the gyrus rectus (cortex) and uvula of vermis (cerebellum). - pituitary + pineal are pulled in and given a diencephalic sibling's collections (view-layer + diencephalon category); pituitary lobes share a "Pituitary gland" parent. They keep their original Z-Anatomy positions. - cochlear nuclei deliberately skipped: Z-Anatomy files them inconsistently (only 1 of 4 under Brain) and they are very coarse. Also add the lateral/medial geniculate bodies to the "Thalamic nuclei" preset. Model is now 383 named structures. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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brain-atlas/app.jsx

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@@ -33,7 +33,7 @@ const PRESETS = [
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brainstem: ['Red nucleus'],
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} },
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{ id: 'thalnuc', label: 'Thalamic nuclei', color: 'var(--c-diencephalon)', on: ['diencephalon'], cortex: 0.10, focus: 'diencephalon',
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subset: { diencephalon: ['Pulvinar', 'Anterior nuclei of thalamus', 'Mediodorsal nucleus', 'Ventral laterodorsal nucleus', 'Ventral lateroventral nucleus', 'Ventral anterior nucleus', 'Intralaminar and lateral posterior nuclei'] } },
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subset: { diencephalon: ['Pulvinar', 'Anterior nuclei of thalamus', 'Mediodorsal nucleus', 'Ventral laterodorsal nucleus', 'Ventral lateroventral nucleus', 'Ventral anterior nucleus', 'Intralaminar and lateral posterior nuclei', 'Lateral geniculate body', 'Medial geniculate body'] } },
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{ id: 'nerves', label: 'Cranial nerves', color: 'var(--c-cranial_nerves)', on: ['cranial_nerves','brainstem'], cortex: 0.12, focus: 'cranial_nerves' },
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{ id: 'dura', label: 'Meninges & dura', color: 'var(--c-meninges_dura)', on: ['meninges_dura','veins_sinuses'], cortex: 0.30, focus: null },
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];

brain-atlas/data.js

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brain-atlas/models/brain.glb

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