Commit 3b30899
brain-atlas: add pituitary, pineal, gyrus rectus, uvula of vermis
These exist in Z-Anatomy but were dropped by the exporter: the pituitary
(adeno/neurohypophysis) and pineal gland are filed under "Endocrine glands"
outside the Brain collection and also hit the gland/non-neural filter; the gyrus
rectus and uvula of vermis are brain tissue wrongly caught by that filter's
"rectus" / "uvula" substrings.
- in_scope now keeps anything under the Brain collection before the non-neural
filter runs (that filter targets cranial-nerve-supplied muscles, not brain
tissue), rescuing the gyrus rectus (cortex) and uvula of vermis (cerebellum).
- pituitary + pineal are pulled in and given a diencephalic sibling's collections
(view-layer + diencephalon category); pituitary lobes share a "Pituitary gland"
parent. They keep their original Z-Anatomy positions.
- cochlear nuclei deliberately skipped: Z-Anatomy files them inconsistently
(only 1 of 4 under Brain) and they are very coarse.
Also add the lateral/medial geniculate bodies to the "Thalamic nuclei" preset.
Model is now 383 named structures.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>1 parent c0b3ecd commit 3b30899
7 files changed
Lines changed: 587 additions & 379 deletions
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