ci: fix linting, config: remove old cluster fix

Author: tensulin

plotting/plot_include_orb.py

@@ -1089,10 +1089,8 @@ def plot_block_correlation(
         for ass_label in ordered_assembler:
             for cat in hue_order:
                 ns_labels.append(f"n={ns.loc[ass_label, cat]:,}")
-                ns_colors.append({'lightgreen': 'darkgreen', '#dddddd': 'darkgray'}.get(block_colors[cat]))
-        ax_ns.set_yticks([x + offset for x in ax.get_yticks() for offset in [-0.2, 0.2]],
-                         labels=ns_labels,
-                         fontsize=8)
+                ns_colors.append({"lightgreen": "darkgreen", "#dddddd": "darkgray"}.get(block_colors[cat]))
+        ax_ns.set_yticks([x + offset for x in ax.get_yticks() for offset in [-0.2, 0.2]], labels=ns_labels, fontsize=8)
         for color, label in zip(ns_colors, ax_ns.get_yticklabels()):
             label.set_color(color)
 

test_nextflow.config

@@ -15,26 +15,11 @@ process {
     clusterOptions = '' // --exclude=rs700-bcf-5.intra //rs700-bcf-1.intra,rs700-bcf-4.intra
 
     beforeScript = """
-        var=/var/scratch/\$USER/process_tmp_\$(date +%s%N)\$RANDOM
-        echo $USER >> log.txt
-        echo \$var > podman_dir.txt
-        mkdir -p \$var/podman
-        #podman system reset -f
-        #podman system migrate
-        export XDG_RUNTIME_DIR=\$var/podman
-        export TMPDIR=\$var
         export http_proxy=http://192.168.10.1:3128
         export https_proxy=http://192.168.10.1:3128
         export ftp_proxy=http://192.168.10.1:3128
     """
 
-     afterScript = """
-        var=\$(cat podman_dir.txt)
-        echo \$var
-        rm -rf \$var
-    """
-
-
     withName: SALMON_QUANT {
         memory = '32G'
         cpus = 32