proteus/.gitignore at main · jvogan/proteus · GitHub

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__pycache__/
*.py[cod]
.DS_Store

# Fetched structures and maps (keep the repo free of downloaded data)
AF-*.pdb
AF-*.cif
AF-*_pae.json
*.pdb
*.cif
*.mmcif
*.bcif
*.ent
*.map
*.mrc
*.mrcs
*.ccp4
!tests/fixtures/*.pdb
!tests/fixtures/*.cif

# Rendered output and movies (host large media externally, not in-repo)
*.mp4
*.mov
*.gif
*.webm
/*.png
/scripts/*.png
banners/

# Generated dossiers (figures + report; regenerate with scripts/kras_dossier.py)
/kras_g12c_dossier/
/*_dossier/

# Generated reports, caches, and batch/download workspaces
/.proteus-cache/
/proteus_batch_out/
/proteus_report_out/
/design_run_out/
/dock_prep_out/
/rosetta_score_out/
/structures/
/ligands/

# Sequences and model weights
*.fasta
*.fa
*.fastq
*.pt
*.pth
*.npy
*.npz

# Secrets
*.pem
*.key
.env
.env.*