Protein level filters

This page shows an overview of filters, which could be applied to protein level filtering.

For score filtering, see Score Filters.

filter	short	type	explanation
number of peptides per protein	nr_peptides_filter	numerical
number of PSM (sets) per protein	nr_psms_per_protein_filter	numerical
number of spectra per protein	nr_spectra_per_protein_filter	numerical
number of unique peptides per protein	nr_unique_peptides_per_protein_filter	numerical	leaves only protein groups through, which have at least X peptides which are unique for one protein (these protein groups obviously will have only one protein)
number of unique peptides per group	nr_group_unique_peptides_per_protein_filter	numerical	leaves only protein groups through, which have at least X peptides which are unique for the proteins of the group
Accessions	protein_accessions_filter	literal_list
Description	protein_description_filter	literal_list
File names	protein_file_list_filter	literal_list
Modifications	protein_modifications_filter	modification	filters for the protein's peptides' modifications
Rank	protein_rank_filter	numerical	filters for the protein's rank, which has to be calculates before this
Sequences	sequence_list_filter	literal_list	filters for the protein's peptides' sequences