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meghamsh738/README.md

Meghamsh Teja Konda

PhD researcher in neuroimmunology at Trinity College Dublin.

I study brain–immune interactions in ageing and build practical software for research workflows, image analysis and play.

Portfolio · GitHub repositories

Research

I am a PhD researcher in neuroimmunology at Trinity College Dublin. My current research focus concerns systemic TNF-α-driven neuroinflammation, delirium vulnerability in ageing, recovery dynamics and IL-17A modulation, as listed in the 2026 TCD Neuroscience Research Day programme.

Publication

“CSF1R inhibition exacerbates gamma oscillation disruption and induces network hyperexcitability in APP/PS1 mice”, Brain, published online 14 July 2026. Meghamsh Konda is credited as the fifth of 11 authors.

Selected projects

A Fiji workflow for atlas-guided tissue alignment and ROI drawing. A recorded native checkpoint reached the Interior editor, but did not accept an alignment, create ROIs or export results.

In progress · native acceptance, ROI and export steps pending

View repository

An eight-module lab workspace for qPCR planning and analysis, cDNA setup, ELISA, colony workflows, Y-maze schedules and a Lab Notebook entry point.

Review build · v0.2.0; source branch six commits ahead of main

EasyLab Suite version 0.2.0 launcher listing its eight lab workflow tools.

View repository

A Next.js and Prisma app for cage-first colony operations and animal-first research workflows. The gallery shows an isolated synthetic local prototype.

Local M16-based synthetic cage create/reload checked; release and M17 pending

Cages table after a fresh page load, showing synthetic cage A101/R1/006 as active and empty at 0 of 6 occupants.

View repository

A browser editor for inspecting and editing Age of Empires II hotkey profiles, with local browser drafts and a synthetic demo.

Build C public demo · synthetic import/edit/reload/ZIP re-import checked; game behavior unverified

Public synthetic demo with House changed to F11; the browser reports one changed binding saved locally.

Open public demo · View compiled demo repository

A visual editor for building and adapting Age of Empires II strategy plans, with controls for responses and placement policies.

Experimental · public Pages demo live; native game behavior unverified

AI Workshop overview in a desktop browser, with Britons and Portuguese presets and an experimental, native-game-unverified badge.

Open live editor · View repository

A hosted quiz-night game with room-code and PIN entry, category picks, a 30-second answer step and a steal round.

Version 12 · single-player flow checked; multiplayer behavior unverified

Buzzer Club desktop landing page with guest room-code and PIN fields and a sign-in-to-host control.

Open showcase · View showcase repository · Play Buzzer Club

Methods & tools

Experimental: mouse handling, stereotaxic surgery, microdissection, behavioural assays and colony work.

Cell, imaging & molecular: flow cytometry, immunofluorescence, confocal microscopy, cell culture, Cre-loxP lineage tracing, qPCR, PCR, RNA/protein extraction, Western blotting and primer design.

Analysis & software: Python, R, ImageJ/Fiji, Imaris, FlowJo, Leica LAS X, GraphPad Prism and AnyMaze.


Project cards and representative screenshots are generated from data/project-catalog.json (catalog update: 2026-10-04). See the portfolio for the current screenshots and verification notes.

Popular repositories Loading

  1. atlasalign atlasalign Public

    Open-source image alignment and brain atlas registration for Fiji / ImageJ2. Review mouse brain microscopy against Allen CCFv3, select anatomical ROIs, and export crops and masks. Supports resumabl…

    Java 3 1

  2. Codrex Codrex Public archive

    Remote codex UI

    Python 2

  3. Mice-breeding-pair-selector Mice-breeding-pair-selector Public

    Breeder Pair Selector is a Python-based GUI application built using chatgpt-o1 assistance, designed to assist in selecting optimal breeder pairs based on desired genotypes. Utilizing PyQt5 for the…

    Python 1

  4. qPCR-analysis-app qPCR-analysis-app Public

    Python 1

  5. ImageJ_codes_ ImageJ_codes_ Public

    There are good macros that come in handy when you need to batch process some images. Here are a few examples

  6. ScRNA-seq-analysis-codes ScRNA-seq-analysis-codes Public

    This repository contains basic workflow explainations for single data RNA sequencing dataset, combining same batch vs different batch scRNA seq datasets and few other codes for automation and analy…