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Harden id_prefix validation in the ontology reload jobs (defense-in-depth, not a bug)

Status: Open.

#1600 In microbiomedata/nmdc-runtime;

· turbomam opened on Aug 28, 2026

Two changesheets applied to the same document race, and the later one silently discards the earlier one's changes

Status: Open.

#1598 In microbiomedata/nmdc-runtime;

· turbomam opened on Aug 28, 2026

NCBI export raises AttributeError when a study has no principal_investigator name

bugSomething isn't workingSomething isn't working

Status: Open.

#1596 In microbiomedata/nmdc-runtime;

· turbomam opened on Aug 24, 2026

Update GOLD-to-Mongo translator to populate PI information onto has_credit_associations instead of principal_investigator

Status: Open.

#1597 In microbiomedata/nmdc-runtime;

· kheal opened on Aug 21, 2026

Update submission-to-Mongo translator to populate PI information onto has_credit_associations instead of principal_investigator

Status: Open.

#1591 In microbiomedata/nmdc-runtime;

· kheal opened on Aug 21, 2026

Implement asynchronous updating of superseded_by field

Status: Open.

Feature

#1589 In microbiomedata/nmdc-runtime;

· eecavanna opened on Aug 15, 2026

Changesheet validation gives every row the last row's linkml_class

Status: Open.

Bug

#1579 In microbiomedata/nmdc-runtime;

· turbomam opened on Aug 12, 2026

changesheets:submit is documented as "applies"; the sheet is applied by a downstream job

Status: Open.

#1577 In microbiomedata/nmdc-runtime;

· turbomam opened on Aug 10, 2026

Mongo collection nmdc._runtime.analytics takes a long time to dump

backlogNot assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized.Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized.

Status: Open.

#1573 In microbiomedata/nmdc-runtime;

· eecavanna opened on Jul 28, 2026

Create GHA workflow that measures "cognitive complexity" (complexipy)

Status: Open.

Feature

#1567 In microbiomedata/nmdc-runtime;

· eecavanna opened on Jul 23, 2026

Reload / idempotency strategy for fast-initial ontology loads before enabling the NCBITaxon schedule

taska thing that can be done. may address multiple issues.a thing that can be done. may address multiple issues.

Status: Open.

#1565 In microbiomedata/nmdc-runtime;

· turbomam opened on Jul 22, 2026

Decide indices for ontology_class_set and ontology_relation_set (loader builds none)

taska thing that can be done. may address multiple issues.a thing that can be done. may address multiple issues.

Status: Open.

#1564 In microbiomedata/nmdc-runtime;

· turbomam opened on Jul 22, 2026