renv.lock

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      "Date": "2025-12-13",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"John W.\", \"Emerson\", role = \"aut\"),  person(\"Michael J.\", \"Kane\", role = \"aut\",  comment = c(ORCID = \"0000-0003-1899-6662\")))",
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      "Title": "Differential Evolution Optimization in Pure R",
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      "URL": "svn://svn.r-forge.r-project.org/svnroot/robustbase/pkg/DEoptimR",
      "Description": "Differential Evolution (DE) stochastic heuristic algorithms for global optimization of problems with and without general constraints. The aim is to curate a collection of its variants that (1) do not sacrifice simplicity of design, (2) are essentially tuning-free, and (3) can be efficiently implemented directly in the R language. Currently, it provides implementations of the algorithms 'jDE' by Brest et al. (2006) <doi:10.1109/TEVC.2006.872133> for single-objective optimization and 'NCDE' by Qu et al. (2012) <doi:10.1109/TEVC.2011.2161873> for multimodal optimization (single-objective problems with multiple solutions).",
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      "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
      "Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"ripley@stats.ox.ac.uk\", comment = \"R port and updates\"))",
      "Note": "Maintainers are not available to give advice on using a package they did not author.",
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        "stats"
      ],
      "Suggests": [
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        "carData"
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      "NeedsCompilation": "yes",
      "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)",
      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
      "Repository": "CRAN"
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      "Date": "2022-05-03",
      "Title": "Graphical Display of Pairwise Linkage Disequilibria Between SNPs",
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        "genetics",
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        "Rcpp"
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      "Date": "2024-06-10",
      "Revision": "$Rev: 3657 $",
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      "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
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      "URL": "https://Matrix.R-forge.R-project.org",
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      "License": "MIT + file LICENSE",
      "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
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      "Title": "Solvers for Large-Scale Eigenvalue and SVD Problems",
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      "Authors@R": "c( person(\"Yixuan\", \"Qiu\", , \"yixuan.qiu@cos.name\", c(\"aut\", \"cre\")), person(\"Jiali\", \"Mei\", , \"vermouthmjl@gmail.com\", \"aut\", comment = \"Function interface of matrix operation\"), person(\"Gael\", \"Guennebaud\", , \"gael.guennebaud@inria.fr\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\"), person(\"Jitse\", \"Niesen\", , \"jitse@maths.leeds.ac.uk\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\") )",
      "Description": "R interface to the 'Spectra' library <https://spectralib.org/> for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user.",
      "License": "MPL (>= 2)",
      "URL": "https://github.com/yixuan/RSpectra",
      "BugReports": "https://github.com/yixuan/RSpectra/issues",
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      "Author": "Yixuan Qiu [aut, cre], Jiali Mei [aut] (Function interface of matrix operation), Gael Guennebaud [ctb] (Eigenvalue solvers from the 'Eigen' library), Jitse Niesen [ctb] (Eigenvalue solvers from the 'Eigen' library)",
      "Maintainer": "Yixuan Qiu <yixuan.qiu@cos.name>",
      "Repository": "CRAN"
    },
    "Rcpp": {
      "Package": "Rcpp",
      "Version": "1.1.1",
      "Source": "Repository",
      "Title": "Seamless R and C++ Integration",
      "Date": "2026-01-07",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"I<U+00F1>aki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
      "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "methods",
        "utils"
      ],
      "Suggests": [
        "tinytest",
        "inline",
        "rbenchmark",
        "pkgKitten (>= 0.1.2)"
      ],
      "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
      "License": "GPL (>= 2)",
      "BugReports": "https://github.com/RcppCore/Rcpp/issues",
      "MailingList": "rcpp-devel@lists.r-forge.r-project.org",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "VignetteBuilder": "Rcpp",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (ORCID: <https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (ORCID: <https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], I<U+00F1>aki Ucar [aut] (ORCID: <https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RcppArmadillo": {
      "Package": "RcppArmadillo",
      "Version": "15.2.4-1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
      "Date": "2026-03-17",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
      "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14 so 'Armadillo' version 14.6.3 is included as a fallback when an R package forces the C++11 standard. Package authors should set a '#define' to select the 'current' version, or select the 'legacy' version (also chosen as default) if they must. See 'GitHub issue #475' for details. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp (>= 1.0.12)",
        "stats",
        "utils",
        "methods"
      ],
      "Suggests": [
        "tinytest",
        "Matrix (>= 1.3.0)",
        "pkgKitten",
        "reticulate",
        "slam"
      ],
      "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
      "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), Doug Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: <https://orcid.org/0000-0002-0049-4501>)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RcppEigen": {
      "Package": "RcppEigen",
      "Version": "0.3.4.0.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library",
      "Date": "2024-08-23",
      "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))",
      "Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
      "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms.  It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2) | file LICENSE",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp (>= 0.11.0)",
        "stats",
        "utils"
      ],
      "Suggests": [
        "Matrix",
        "inline",
        "tinytest",
        "pkgKitten",
        "microbenchmark"
      ],
      "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html",
      "BugReports": "https://github.com/RcppCore/RcppEigen/issues",
      "NeedsCompilation": "yes",
      "Author": "Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Yixuan Qiu [aut] (<https://orcid.org/0000-0003-0109-6692>), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RhpcBLASctl": {
      "Package": "RhpcBLASctl",
      "Version": "0.23-42",
      "Source": "Repository",
      "Date": "2023-02-11",
      "Title": "Control the Number of Threads on 'BLAS'",
      "Author": "Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama <nakama@ki.rim.or.jp>",
      "Maintainer": "Ei-ji Nakama <nakama@ki.rim.or.jp>",
      "Description": "Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL'). And possible to control the number of threads in 'OpenMP'. Get a number of logical cores and physical cores if feasible.",
      "License": "AGPL-3",
      "URL": "https://prs.ism.ac.jp/~nakama/Rhpc/",
      "ByteCompile": "true",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "S7": {
      "Package": "S7",
      "Version": "0.2.1",
      "Source": "Repository",
      "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4",
      "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )",
      "Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.",
      "License": "MIT + file LICENSE",
      "URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7",
      "BugReports": "https://github.com/RConsortium/S7/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "bench",
        "callr",
        "covr",
        "knitr",
        "methods",
        "rmarkdown",
        "testthat (>= 3.2.0)",
        "tibble"
      ],
      "VignetteBuilder": "knitr",
      "Config/build/compilation-database": "true",
      "Config/Needs/website": "sloop",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Config/testthat/start-first": "external-generic",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (ORCID: <https://orcid.org/0000-0002-2739-7082>), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Luke Tierney [aut], Hadley Wickham [aut, cre] (ORCID: <https://orcid.org/0000-0003-4757-117X>)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "base64enc": {
      "Package": "base64enc",
      "Version": "0.1-6",
      "Source": "Repository",
      "Title": "Tools for 'base64' Encoding",
      "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: <https://orcid.org/0000-0003-2297-1732>)",
      "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Enhances": [
        "png"
      ],
      "Description": "Tools for handling 'base64' encoding. It is more flexible than the orphaned 'base64' package.",
      "License": "GPL-2 | GPL-3",
      "URL": "https://www.rforge.net/base64enc",
      "BugReports": "https://github.com/s-u/base64enc/issues",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "bigassertr": {
      "Package": "bigassertr",
      "Version": "0.1.7",
      "Source": "Repository",
      "Title": "Assertion and Message Functions",
      "Date": "2025-06-27",
      "Authors@R": "person(given = \"Florian\", family = \"Privé\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "Description": "Enhanced message functions (cat() / message() / warning() / error())  using wrappers around sprintf(). Also, multiple assertion functions  (e.g. to check class, length, values, files, arguments, etc.).",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "Suggests": [
        "testthat",
        "covr"
      ],
      "URL": "https://github.com/privefl/bigassertr",
      "BugReports": "https://github.com/privefl/bigassertr/issues",
      "NeedsCompilation": "no",
      "Author": "Florian Privé [aut, cre]",
      "Maintainer": "Florian Privé <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
    },
    "bigparallelr": {
      "Package": "bigparallelr",
      "Version": "0.3.2",
      "Source": "Repository",
      "Title": "Easy Parallel Tools",
      "Authors@R": "person(given = \"Florian\", family = \"Privé\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "Description": "Utility functions for easy parallelism in R. Include some reexports from other packages, utility functions for splitting and parallelizing over blocks, and choosing and setting the number of cores used.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "Imports": [
        "bigassertr (>= 0.1.1)",
        "doParallel",
        "flock",
        "parallel",
        "parallelly",
        "RhpcBLASctl"
      ],
      "Depends": [
        "foreach"
      ],
      "Suggests": [
        "testthat",
        "covr"
      ],
      "URL": "https://github.com/privefl/bigparallelr",
      "BugReports": "https://github.com/privefl/bigparallelr/issues",
      "NeedsCompilation": "no",
      "Author": "Florian Privé [aut, cre]",
      "Maintainer": "Florian Privé <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
    },
    "bigreadr": {
      "Package": "bigreadr",
      "Version": "0.2.5",
      "Source": "Repository",
      "Date": "2022-12-06",
      "Title": "Read Large Text Files",
      "Description": "Read large text files by splitting them in smaller files. Package 'bigreadr' also provides some convenient wrappers around fread() and fwrite() from package 'data.table'.",
      "Authors@R": "person(given = \"Florian\", family = \"Priv<U+00E9>\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "ByteCompile": "true",
      "RoxygenNote": "6.1.0",
      "Imports": [
        "bigassertr (>= 0.1.1)",
        "data.table",
        "parallelly",
        "Rcpp",
        "utils"
      ],
      "Suggests": [
        "spelling",
        "testthat",
        "covr",
        "RSQLite"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Language": "en-US",
      "URL": "https://github.com/privefl/bigreadr",
      "BugReports": "https://github.com/privefl/bigreadr/issues",
      "NeedsCompilation": "yes",
      "Author": "Florian Priv<U+00E9> [aut, cre]",
      "Maintainer": "Florian Priv<U+00E9> <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
    },
    "bigsnpr": {
      "Package": "bigsnpr",
      "Version": "1.12.21",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Title": "Analysis of Massive SNP Arrays",
      "Date": "2025-08-21",
      "Authors@R": "c( person(\"Florian\", \"Priv<U+00E9>\", email = \"florian.prive.21@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Michael\", \"Blum\", role = \"ths\"), person(\"Hugues\", \"Aschard\", email = \"hugues.aschard@pasteur.fr\", role = \"ths\"), person(\"Bjarni J<U+00F3>hann\", \"Vilhj<U+00E1>lmsson\", email = \"bjv@econ.au.dk\", role = \"ths\"))",
      "Description": "Easy-to-use, efficient, flexible and scalable tools for analyzing  massive SNP arrays. Priv<U+00E9> et al. (2018) <doi:10.1093/bioinformatics/bty185>.",
      "License": "GPL-3",
      "LazyData": "TRUE",
      "Language": "en-US",
      "ByteCompile": "TRUE",
      "SystemRequirements": "A few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).",
      "Depends": [
        "R (>= 3.4)",
        "bigstatsr (>= 1.6.2)"
      ],
      "Imports": [
        "bigassertr (>= 0.1.7)",
        "bigparallelr",
        "bigsparser (>= 0.6)",
        "bigreadr",
        "bigutilsr (>= 0.3.3)",
        "data.table (>= 1.12.4)",
        "doRNG",
        "foreach",
        "ggplot2",
        "magrittr",
        "Matrix (>= 1.3.0)",
        "methods",
        "Rcpp",
        "runonce (>= 0.2.3)",
        "stats",
        "vctrs"
      ],
      "LinkingTo": [
        "bigsparser",
        "bigstatsr",
        "Rcpp",
        "RcppArmadillo (>= 0.9.600)",
        "rmio",
        "roptim (>= 0.1.6)"
      ],
      "Suggests": [
        "bindata",
        "covr",
        "dbplyr (>= 1.4)",
        "dplyr",
        "gaston",
        "glue",
        "Hmisc",
        "microbenchmark",
        "pcadapt (>= 4.1)",
        "quadprog",
        "RhpcBLASctl",
        "rmutil",
        "RSpectra",
        "RSQLite",
        "R.utils",
        "spelling",
        "testthat",
        "tibble",
        "xgboost"
      ],
      "RoxygenNote": "7.3.2",
      "URL": "https://privefl.github.io/bigsnpr/",
      "BugReports": "https://github.com/privefl/bigsnpr/issues",
      "NeedsCompilation": "yes",
      "Author": "Florian Priv<U+00E9> [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni J<U+00F3>hann Vilhj<U+00E1>lmsson [ths]",
      "Maintainer": "Florian Priv<U+00E9> <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
    },
    "bigsparser": {
      "Package": "bigsparser",
      "Version": "0.7.3",
      "Source": "Repository",
      "Title": "Sparse Matrix Format with Data on Disk",
      "Authors@R": "person(given = \"Florian\", family = \"Priv<U+00E9>\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "Description": "Provide a sparse matrix format with data stored on disk, to be used in both R and C++. This is intended for more efficient use of sparse  data in C++ and also when parallelizing, since data on disk does not need copying. Only a limited number of features will be implemented. For now, conversion can be performed from a 'dgCMatrix' or a 'dsCMatrix' from R  package 'Matrix'. A new compact format is also now available.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "URL": "https://github.com/privefl/bigsparser",
      "BugReports": "https://github.com/privefl/bigsparser/issues",
      "Depends": [
        "R (>= 3.1)"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppEigen",
        "rmio"
      ],
      "Imports": [
        "Rcpp",
        "bigassertr",
        "methods",
        "Matrix",
        "rmio (>= 0.4)"
      ],
      "Suggests": [
        "testthat (>= 2.1.0)"
      ],
      "NeedsCompilation": "yes",
      "Author": "Florian Priv<U+00E9> [aut, cre]",
      "Maintainer": "Florian Priv<U+00E9> <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
    },
    "bigstatsr": {
      "Package": "bigstatsr",
      "Version": "1.6.2",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Title": "Statistical Tools for Filebacked Big Matrices",
      "Date": "2025-06-30",
      "Authors@R": "c( person(\"Florian\", \"Privé\", email = \"florian.prive.21@gmail.com\",  role = c(\"aut\", \"cre\")), person(\"Michael\", \"Blum\", role = \"ths\"), person(\"Hugues\", \"Aschard\", email = \"hugues.aschard@pasteur.fr\", role = \"ths\"))",
      "Description": "Easy-to-use, efficient, flexible and scalable statistical tools. Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping. It provides for instance matrix operations, Principal Component Analysis, sparse linear supervised models, utility functions and more <doi:10.1093/bioinformatics/bty185>.",
      "License": "GPL-3",
      "Language": "en-US",
      "ByteCompile": "TRUE",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "bigassertr (>= 0.1.7)",
        "bigparallelr (>= 0.2.3)",
        "cowplot",
        "foreach",
        "ggplot2 (>= 3.0)",
        "graphics",
        "methods",
        "ps (>= 1.4)",
        "Rcpp",
        "rmio (>= 0.4)",
        "RSpectra",
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      "License": "GPL-2 | GPL-3",
      "LazyLoad": "yes",
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      "Maintainer": "Alessandra R. Brazzale <brazzale@stat.unipd.it>",
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      "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and  D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.",
      "Title": "Bootstrap Functions (Originally by Angelo Canty for S)",
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        "R (>= 3.0.0)",
        "graphics",
        "stats"
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        "survival"
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      "NeedsCompilation": "no",
      "Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. Brazzale [ctb, cre] (minor bug fixes)",
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      "Description": "Implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/gregfrog/brew",
      "BugReports": "https://github.com/gregfrog/brew/issues",
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      "Description": "Functions to handle basic input output, these functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.",
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      "URL": "https://brio.r-lib.org, https://github.com/r-lib/brio",
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      "Config/Needs/website": "tidyverse/tidytemplate",
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      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), G<U+00E1>bor Cs<U+00E1>rdi [aut, cre], Posit Software, PBC [cph, fnd]",
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      "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )",
      "Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
      "BugReports": "https://github.com/rstudio/bslib/issues",
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        "R (>= 2.10)"
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        "bsicons",
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        "fontawesome",
        "future",
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        "knitr",
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        "magrittr",
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        "rmarkdown (>= 2.7)",
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        "tools",
        "utils",
        "withr",
        "yaml"
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      "Config/Needs/routine": "chromote, desc, renv",
      "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*",
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      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (ORCID: <https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], Garrick Aden-Buie [aut] (ORCID: <https://orcid.org/0000-0002-7111-0077>), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)",
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      "Repository": "CRAN"
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      "Description": "Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.",
      "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "ByteCompile": "true",
      "URL": "https://cachem.r-lib.org/, https://github.com/r-lib/cachem",
      "Imports": [
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      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
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      "Repository": "CRAN"
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      "Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all.  This packages does exactly that.",
      "License": "MIT + file LICENSE",
      "URL": "https://callr.r-lib.org, https://github.com/r-lib/callr",
      "BugReports": "https://github.com/r-lib/callr/issues",
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      "Config/Needs/website": "r-lib/asciicast, glue, htmlwidgets, igraph, tibble, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
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      "Author": "Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
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      "Date": "2023-05-02",
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        "utils"
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      "Description": "Various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.",
      "Title": "Functions for Classification",
      "ByteCompile": "yes",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "NeedsCompilation": "yes",
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      "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.",
      "License": "MIT + file LICENSE",
      "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
      "BugReports": "https://github.com/r-lib/cli/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "utils"
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        "htmltools",
        "htmlwidgets",
        "knitr",
        "methods",
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        "ps (>= 1.3.4.9000)",
        "rlang (>= 1.0.2.9003)",
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        "rprojroot",
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        "testthat (>= 3.2.0)",
        "tibble",
        "whoami",
        "withr"
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      "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
      "Config/testthat/edition": "3",
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      "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
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      "Repository": "CRAN"
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      "Source": "Repository",
      "Date": "2023-11-30",
      "Priority": "recommended",
      "Title": "\"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et al.",
      "Description": "Methods for Cluster analysis.  Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".",
      "Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
      "Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) ,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"peter.rousseeuw@kuleuven.be\", comment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\")) ,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\") ,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"Mia.Hubert@uia.ua.ac.be\", comment = c(\"S original\", ORCID = \"0000-0001-6398-4850\")) ,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"), email=\"Kurt.Hornik@R-project.org\", comment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\")) ,person(\"Matthias\", \"Studer\", role=\"ctb\") ,person(\"Pierre\", \"Roudier\", role=\"ctb\") ,person(\"Juan\",   \"Gonzalez\", role=\"ctb\") ,person(\"Kamil\",  \"Kozlowski\", role=\"ctb\") ,person(\"Erich\",  \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\", ORCID = \"0000-0001-9143-4880\")) ,person(\"Keefe\",  \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\") #not yet ,person(\"Fischer-Rasmussen\", \"Kasper\", role = \"ctb\", comment = \"Gower distance for CLARA\") )",
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        "utils"
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        "Matrix"
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      "Enhances": [
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        "fpc",
        "ellipse",
        "sfsmisc"
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      "EnhancesNote": "xref-ed in man/*.Rd",
      "LazyLoad": "yes",
      "LazyData": "yes",
      "ByteCompile": "yes",
      "BuildResaveData": "no",
      "License": "GPL (>= 2)",
      "URL": "https://svn.r-project.org/R-packages/trunk/cluster/",
      "NeedsCompilation": "yes",
      "Author": "Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Peter Rousseeuw [aut] (Fortran original, <https://orcid.org/0000-0002-3807-5353>), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000), <https://orcid.org/0000-0003-4198-9911>), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Erich Schubert [ctb] (fastpam options for pam(), <https://orcid.org/0000-0001-9143-4880>), Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Priority": "recommended",
      "Author": "Luke Tierney <luke-tierney@uiowa.edu>",
      "Description": "Code analysis tools for R.",
      "Title": "Code Analysis Tools for R",
      "Depends": [
        "R (>= 2.1)"
      ],
      "Maintainer": "Luke Tierney <luke-tierney@uiowa.edu>",
      "URL": "https://gitlab.com/luke-tierney/codetools",
      "License": "GPL",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
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      "Package": "coloc",
      "Version": "5.2.3",
      "Source": "Repository",
      "Type": "Package",
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        "data.table",
        "ggplot2",
        "methods",
        "viridis",
        "stats",
        "grDevices",
        "susieR (>= 0.12.06)",
        "utils"
      ],
      "Suggests": [
        "knitr",
        "testthat",
        "mvtnorm",
        "magrittr",
        "rmarkdown"
      ],
      "Title": "Colocalisation Tests of Two Genetic Traits",
      "Date": "2023-09-22",
      "Authors@R": "c(person(\"Chris\", \"Wallace\", role=c(\"aut\",\"cre\"), email = \"cew54@cam.ac.uk\"), person(\"Claudia\",\"Giambartolomei\", role=\"aut\", email=\"claudia.giambartolomei.10@ucl.ac.uk\"), person(\"Vincent\",\"Plagnol\", role=\"ctb\", email=\"v.plagnol@ucl.ac.uk\"))",
      "Maintainer": "Chris Wallace <cew54@cam.ac.uk>",
      "Description": "Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.",
      "License": "GPL",
      "LazyLoad": "yes",
      "VignetteBuilder": "knitr",
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      "Encoding": "UTF-8",
      "URL": "https://github.com/chr1swallace/coloc",
      "BugReports": "https://github.com/chr1swallace/coloc/issues",
      "Collate": "'coloc-package.R' 'boundaries.R' 'check.R' 'claudia.R' 'plot.R' 'private.R' 'sensitivity.R' 'split.R' 'susie.R' 'testdata.R' 'zzz.R'",
      "Depends": [
        "R (>= 3.5)"
      ],
      "NeedsCompilation": "no",
      "Author": "Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]",
      "Repository": "CRAN"
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      "Source": "Repository",
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      "Maintainer": "Vince Carey <stvjc@channing.harvard.edu>",
      "Description": "routines for combinatorics",
      "License": "GPL-2",
      "Repository": "CRAN"
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      "Source": "Repository",
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      "Description": "The CommonMark specification <https://github.github.com/gfm/> defines a rationalized version of markdown syntax. This package uses the 'cmark'  reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.",
      "License": "BSD_2_clause + file LICENSE",
      "URL": "https://docs.ropensci.org/commonmark/ https://ropensci.r-universe.dev/commonmark",
      "BugReports": "https://github.com/r-lib/commonmark/issues",
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      "Language": "en-US",
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      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (ORCID: <https://orcid.org/0000-0002-4035-0289>), John MacFarlane [cph] (Author of cmark)",
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      "Description": "Provides various features that help with creating publication-quality figures with 'ggplot2', such as a set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images. The package was originally written for internal use in the Wilke lab, hence the name (Claus O. Wilke's plot package). It has also been used extensively in the book Fundamentals of Data Visualization.",
      "URL": "https://wilkelab.org/cowplot/",
      "BugReports": "https://github.com/wilkelab/cowplot/issues",
      "Depends": [
        "R (>= 3.5.0)"
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        "gtable",
        "grDevices",
        "methods",
        "rlang",
        "scales"
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      "License": "GPL-2",
      "Suggests": [
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        "knitr",
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        "maps",
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        "patchwork",
        "rmarkdown",
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        "testthat (>= 1.0.0)",
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        "vdiffr (>= 0.3.0)",
        "VennDiagram"
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      "Collate": "'add_sub.R' 'align_plots.R' 'as_grob.R' 'as_gtable.R' 'axis_canvas.R' 'cowplot.R' 'draw.R' 'get_plot_component.R' 'get_axes.R' 'get_titles.R' 'get_legend.R' 'get_panel.R' 'gtable.R' 'key_glyph.R' 'plot_grid.R' 'save.R' 'set_null_device.R' 'setup.R' 'stamp.R' 'themes.R' 'utils_ggplot2.R'",
      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Claus O. Wilke [aut, cre] (ORCID: <https://orcid.org/0000-0002-7470-9261>)",
      "Maintainer": "Claus O. Wilke <wilke@austin.utexas.edu>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Title": "A C++11 Interface for R's C Interface",
      "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"Fran<U+00E7>ois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a header only, C++11 interface to R's C interface.  Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.",
      "License": "MIT + file LICENSE",
      "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11",
      "BugReports": "https://github.com/r-lib/cpp11/issues",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Suggests": [
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        "brio",
        "callr",
        "cli",
        "covr",
        "decor",
        "desc",
        "ggplot2",
        "glue",
        "knitr",
        "lobstr",
        "mockery",
        "progress",
        "rmarkdown",
        "scales",
        "Rcpp",
        "testthat (>= 3.2.0)",
        "tibble",
        "utils",
        "vctrs",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Davis Vaughan [aut, cre] (ORCID: <https://orcid.org/0000-0003-4777-038X>), Jim Hester [aut] (ORCID: <https://orcid.org/0000-0002-2739-7082>), Romain Fran<U+00E7>ois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
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      "Package": "crayon",
      "Version": "1.5.3",
      "Source": "Repository",
      "Title": "Colored Terminal Output",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects.  Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily.  This package was inspired by the 'chalk' 'JavaScript' project.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon",
      "BugReports": "https://github.com/r-lib/crayon/issues",
      "Imports": [
        "grDevices",
        "methods",
        "utils"
      ],
      "Suggests": [
        "mockery",
        "rstudioapi",
        "testthat",
        "withr"
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      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Package": "curl",
      "Version": "7.0.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Modern and Flexible Web Client for R",
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))",
      "Description": "Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the  'httr2' package which builds on this package with http specific tools and logic.",
      "License": "MIT + file LICENSE",
      "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)",
      "URL": "https://jeroen.r-universe.dev/curl",
      "BugReports": "https://github.com/jeroen/curl/issues",
      "Suggests": [
        "spelling",
        "testthat (>= 1.0.0)",
        "knitr",
        "jsonlite",
        "later",
        "rmarkdown",
        "httpuv (>= 1.4.4)",
        "webutils"
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      "VignetteBuilder": "knitr",
      "Depends": [
        "R (>= 3.0.0)"
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      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (ORCID: <https://orcid.org/0000-0002-4035-0289>), Hadley Wickham [ctb], Posit Software, PBC [cph]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "CRAN"
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      "Package": "data.table",
      "Version": "1.18.2.1",
      "Source": "Repository",
      "Title": "Extension of `data.frame`",
      "Depends": [
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      "Imports": [
        "methods"
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      "Suggests": [
        "bit64 (>= 4.0.0)",
        "bit (>= 4.0.4)",
        "R.utils (>= 2.13.0)",
        "xts",
        "zoo (>= 1.8-1)",
        "yaml",
        "knitr",
        "markdown"
      ],
      "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.",
      "License": "MPL-2.0 | file LICENSE",
      "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table",
      "BugReports": "https://github.com/Rdatatable/data.table/issues",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "ByteCompile": "TRUE",
      "Authors@R": "c( person(\"Tyson\",\"Barrett\",        role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\",           role=\"aut\",          email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\",      role=\"aut\",          email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\",          role=\"aut\",          email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\",      role=\"aut\",          email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\",         role=\"aut\",          email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\",         role=\"aut\",          email=\"ikrylov@disroot.org\",   comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\",      role=\"ctb\"), person(\"Tom\",\"Short\",            role=\"ctb\"), person(\"Steve\",\"Lianoglou\",      role=\"ctb\"), person(\"Eduard\",\"Antonyan\",      role=\"ctb\"), person(\"Markus\",\"Bonsch\",        role=\"ctb\"), person(\"Hugh\",\"Parsonage\",       role=\"ctb\"), person(\"Scott\",\"Ritchie\",        role=\"ctb\"), person(\"Kun\",\"Ren\",              role=\"ctb\"), person(\"Xianying\",\"Tan\",         role=\"ctb\"), person(\"Rick\",\"Saporta\",         role=\"ctb\"), person(\"Otto\",\"Seiskari\",        role=\"ctb\"), person(\"Xianghui\",\"Dong\",        role=\"ctb\"), person(\"Michel\",\"Lang\",          role=\"ctb\"), person(\"Watal\",\"Iwasaki\",        role=\"ctb\"), person(\"Seth\",\"Wenchel\",         role=\"ctb\"), person(\"Karl\",\"Broman\",          role=\"ctb\"), person(\"Tobias\",\"Schmidt\",       role=\"ctb\"), person(\"David\",\"Arenburg\",       role=\"ctb\"), person(\"Ethan\",\"Smith\",          role=\"ctb\"), person(\"Francois\",\"Cocquemas\",   role=\"ctb\"), person(\"Matthieu\",\"Gomez\",       role=\"ctb\"), person(\"Philippe\",\"Chataignon\",  role=\"ctb\"), person(\"Nello\",\"Blaser\",         role=\"ctb\"), person(\"Dmitry\",\"Selivanov\",     role=\"ctb\"), person(\"Andrey\",\"Riabushenko\",   role=\"ctb\"), person(\"Cheng\",\"Lee\",            role=\"ctb\"), person(\"Declan\",\"Groves\",        role=\"ctb\"), person(\"Daniel\",\"Possenriede\",   role=\"ctb\"), person(\"Felipe\",\"Parages\",       role=\"ctb\"), person(\"Denes\",\"Toth\",           role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\",    role=\"ctb\"), person(\"Ayappan\",\"Perumal\",      role=\"ctb\"), person(\"James\",\"Sams\",           role=\"ctb\"), person(\"Martin\",\"Morgan\",        role=\"ctb\"), person(\"Michael\",\"Quinn\",        role=\"ctb\"), person(given=\"@javrucebo\",       role=\"ctb\", comment=\"GitHub user\"), person(\"Marc\",\"Halperin\",        role=\"ctb\"), person(\"Roy\",\"Storey\",           role=\"ctb\"), person(\"Manish\",\"Saraswat\",      role=\"ctb\"), person(\"Morgan\",\"Jacob\",         role=\"ctb\"), person(\"Michael\",\"Schubmehl\",    role=\"ctb\"), person(\"Davis\",\"Vaughan\",        role=\"ctb\"), person(\"Leonardo\",\"Silvestri\",   role=\"ctb\"), person(\"Jim\",\"Hester\",           role=\"ctb\"), person(\"Anthony\",\"Damico\",       role=\"ctb\"), person(\"Sebastian\",\"Freundt\",    role=\"ctb\"), person(\"David\",\"Simons\",         role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\",          role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\",        role=\"ctb\"), person(\"Kevin\",\"Ushey\",          role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\",    role=\"ctb\"), person(\"Tony\",\"Fischetti\",       role=\"ctb\"), person(\"Ofek\",\"Shilon\",          role=\"ctb\"), person(\"Vadim\",\"Khotilovich\",    role=\"ctb\"), person(\"Hadley\",\"Wickham\",       role=\"ctb\"), person(\"Bennet\",\"Becker\",        role=\"ctb\"), person(\"Kyle\",\"Haynes\",          role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\",   role=\"ctb\"), person(\"Josh\",\"O'Brien\",         role=\"ctb\"), person(\"Dereck\",\"de Mezquita\",   role=\"ctb\"), person(\"Michael\",\"Czekanski\",    role=\"ctb\"), person(\"Dmitry\", \"Shemetov\",     role=\"ctb\"), person(\"Nitish\", \"Jha\",          role=\"ctb\"), person(\"Joshua\", \"Wu\",           role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\",   role=\"ctb\"), person(\"Anirban\", \"Chetia\",      role=\"ctb\"), person(\"Doris\", \"Amoakohene\",    role=\"ctb\"), person(\"Angel\", \"Feliz\",         role=\"ctb\"), person(\"Michael\",\"Young\",        role=\"ctb\"), person(\"Mark\", \"Seeto\",          role=\"ctb\"), person(\"Philippe\", \"Grosjean\",   role=\"ctb\"), person(\"Vincent\", \"Runge\",       role=\"ctb\"), person(\"Christian\", \"Wia\",       role=\"ctb\"), person(\"Elise\", \"Maigné\",        role=\"ctb\"), person(\"Vincent\", \"Rocher\",      role=\"ctb\"), person(\"Vijay\", \"Lulla\",         role=\"ctb\"), person(\"Aljaž\", \"Sluga\",         role=\"ctb\"), person(\"Bill\", \"Evans\",          role=\"ctb\"), person(\"Reino\", \"Bruner\",        role=\"ctb\"), person(given=\"@badasahog\",       role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\",        role=\"ctb\"), person(\"Mukul\", \"Kumar\",         role=\"ctb\"), person(\"Ildikó\", \"Czeller\",      role=\"ctb\"), person(\"Manmita\", \"Das\",         role=\"ctb\") )",
      "NeedsCompilation": "yes",
      "Author": "Tyson Barrett [aut, cre] (ORCID: <https://orcid.org/0000-0002-2137-1391>), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: <https://orcid.org/0000-0003-0787-087X>), Toby Hocking [aut] (ORCID: <https://orcid.org/0000-0002-3146-0865>), Benjamin Schwendinger [aut] (ORCID: <https://orcid.org/0000-0003-3315-8114>), Ivan Krylov [aut] (ORCID: <https://orcid.org/0000-0002-0172-3812>), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb]",
      "Maintainer": "Tyson Barrett <t.barrett88@gmail.com>",
      "Repository": "CRAN"
    },
    "desc": {
      "Package": "desc",
      "Version": "1.4.3",
      "Source": "Repository",
      "Title": "Manipulate DESCRIPTION Files",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Tools to read, write, create, and manipulate DESCRIPTION files.  It is intended for packages that create or manipulate other packages.",
      "License": "MIT + file LICENSE",
      "URL": "https://desc.r-lib.org/, https://github.com/r-lib/desc",
      "BugReports": "https://github.com/r-lib/desc/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "cli",
        "R6",
        "utils"
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      "Config/testthat/edition": "3",
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      "Language": "en-US",
      "RoxygenNote": "7.2.3",
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      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Kirill Müller [aut], Jim Hester [aut], Maëlle Salmon [ctb] (<https://orcid.org/0000-0002-2815-0399>), Posit Software, PBC [cph, fnd]",
      "Repository": "CRAN"
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      "Version": "0.3.6",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Diffs for R Objects",
      "Description": "Generate a colorized diff of two R objects for an intuitive visualization of their differences.",
      "Authors@R": "c( person( \"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person( \"Michael B.\", \"Allen\", email=\"ioplex@gmail.com\", role=c(\"ctb\", \"cph\"), comment=\"Original C implementation of Myers Diff Algorithm\"))",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "License": "GPL-2 | GPL-3",
      "URL": "https://github.com/brodieG/diffobj",
      "BugReports": "https://github.com/brodieG/diffobj/issues",
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      "Imports": [
        "crayon (>= 1.3.2)",
        "tools",
        "methods",
        "utils",
        "stats"
      ],
      "NeedsCompilation": "yes",
      "Author": "Brodie Gaslam [aut, cre], Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff Algorithm)",
      "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
      "Repository": "CRAN"
    },
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      "Version": "0.6.39",
      "Source": "Repository",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))",
      "Date": "2025-11-19",
      "Title": "Create Compact Hash Digests of R Objects",
      "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
      "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html",
      "BugReports": "https://github.com/eddelbuettel/digest/issues",
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      ],
      "Imports": [
        "utils"
      ],
      "License": "GPL (>= 2)",
      "Suggests": [
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        "simplermarkdown",
        "rbenchmark"
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      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Antoine Lucas [ctb] (ORCID: <https://orcid.org/0000-0002-8059-9767>), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: <https://orcid.org/0000-0002-7579-5165>), Simon Urbanek [ctb] (ORCID: <https://orcid.org/0000-0003-2297-1732>), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: <https://orcid.org/0000-0001-8552-0029>), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: <https://orcid.org/0000-0002-2739-7082>), Wush Wu [ctb] (ORCID: <https://orcid.org/0000-0001-5180-0567>), Qiang Kou [ctb] (ORCID: <https://orcid.org/0000-0001-6786-5453>), Thierry Onkelinx [ctb] (ORCID: <https://orcid.org/0000-0001-8804-4216>), Michel Lang [ctb] (ORCID: <https://orcid.org/0000-0001-9754-0393>), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Radford Neal [ctb] (ORCID: <https://orcid.org/0000-0002-2473-3407>), Kendon Bell [ctb] (ORCID: <https://orcid.org/0000-0002-9093-8312>), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: <https://orcid.org/0000-0003-0492-6647>), Ion Suruceanu [ctb] (ORCID: <https://orcid.org/0009-0005-6446-4909>), Bill Denney [ctb] (ORCID: <https://orcid.org/0000-0002-5759-428X>), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: <https://orcid.org/0009-0008-8480-1329>), Sergey Fedorov [ctb] (ORCID: <https://orcid.org/0000-0002-5970-7233>), Will Landau [ctb] (ORCID: <https://orcid.org/0000-0003-1878-3253>), Floris Vanderhaeghe [ctb] (ORCID: <https://orcid.org/0000-0002-6378-6229>), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: <https://orcid.org/0000-0001-7813-818X>), Mark van der Loo [ctb] (ORCID: <https://orcid.org/0000-0002-9807-4686>), Chris Muir [ctb] (ORCID: <https://orcid.org/0000-0003-2555-3878>), Moritz Beller [ctb] (ORCID: <https://orcid.org/0000-0003-4852-0526>), Sebastian Campbell [ctb] (ORCID: <https://orcid.org/0009-0000-5948-4503>), Winston Chang [ctb] (ORCID: <https://orcid.org/0000-0002-1576-2126>), Dean Attali [ctb] (ORCID: <https://orcid.org/0000-0002-5645-3493>), Michael Chirico [ctb] (ORCID: <https://orcid.org/0000-0003-0787-087X>), Kevin Ushey [ctb] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Carl Pearson [ctb] (ORCID: <https://orcid.org/0000-0003-0701-7860>)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "doParallel": {
      "Package": "doParallel",
      "Version": "1.0.17",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Foreach Parallel Adaptor for the 'parallel' Package",
      "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Microsoft\", \"Corporation\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"), person(\"Dan\", \"Tenenbaum\", role=\"ctb\"))",
      "Description": "Provides a parallel backend for the %dopar% function using the parallel package.",
      "Depends": [
        "R (>= 2.14.0)",
        "foreach (>= 1.2.0)",
        "iterators (>= 1.0.0)",
        "parallel",
        "utils"
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      "Suggests": [
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        "mlbench",
        "rpart",
        "RUnit"
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      "Enhances": [
        "compiler"
      ],
      "License": "GPL-2",
      "URL": "https://github.com/RevolutionAnalytics/doparallel",
      "BugReports": "https://github.com/RevolutionAnalytics/doparallel/issues",
      "NeedsCompilation": "no",
      "Author": "Folashade Daniel [cre], Microsoft Corporation [aut, cph], Steve Weston [aut], Dan Tenenbaum [ctb]",
      "Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
      "Repository": "CRAN"
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    "doRNG": {
      "Package": "doRNG",
      "Version": "1.8.6.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Generic Reproducible Parallel Backend for 'foreach' Loops",
      "Date": "2026-02-05",
      "Encoding": "UTF-8",
      "Authors@R": "c( person(\"Renaud\", \"Gaujoux\", email = \"renozao@protonmail.com\", role = c(\"aut\")), person(given = c(\"Emilio\", \"L.\"), family = \"S<U+00E1>enz Guill<U+00E9>n\", email = \"Emilio.Saenz-Guillen@citystgeorges.ac.uk\", role = \"cre\") )",
      "Description": "Provides functions to perform reproducible parallel foreach loops, using independent random streams as generated by L'Ecuyer's combined multiple-recursive generator [L'Ecuyer (1999), <DOI:10.1287/opre.47.1.159>]. It enables to easily convert standard '%dopar%' loops into fully reproducible loops, independently of the number of workers, the task scheduling strategy, or the chosen parallel environment and associated foreach backend.",
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "URL": "https://github.com/emilioluissaenzguillen/doRNG",
      "BugReports": "https://github.com/emilioluissaenzguillen/doRNG/issues",
      "Depends": [
        "R (>= 3.0.0)",
        "foreach",
        "rngtools (>= 1.5)"
      ],
      "Imports": [
        "stats",
        "utils",
        "iterators"
      ],
      "Suggests": [
        "doParallel",
        "doMPI",
        "doRedis",
        "rbenchmark",
        "knitr",
        "rbibutils (>= 1.3)",
        "testthat",
        "covr"
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      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Renaud Gaujoux [aut], Emilio L. S<U+00E1>enz Guill<U+00E9>n [cre]",
      "Maintainer": "Emilio L. S<U+00E1>enz Guill<U+00E9>n <Emilio.Saenz-Guillen@citystgeorges.ac.uk>",
      "Repository": "CRAN"
    },
    "evaluate": {
      "Package": "evaluate",
      "Version": "1.0.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Parsing and Evaluation Tools that Provide More Details than the Default",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevičius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.",
      "License": "MIT + file LICENSE",
      "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate",
      "BugReports": "https://github.com/r-lib/evaluate/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Suggests": [
        "callr",
        "covr",
        "ggplot2 (>= 3.3.6)",
        "lattice",
        "methods",
        "pkgload",
        "ragg (>= 1.4.0)",
        "rlang (>= 1.1.5)",
        "knitr",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "farver": {
      "Package": "farver",
      "Version": "2.1.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "High Performance Colour Space Manipulation",
      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The encoding of colour can be handled in many different ways, using different colour spaces. As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver",
      "BugReports": "https://github.com/thomasp85/farver/issues",
      "Suggests": [
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        "testthat (>= 3.0.0)"
      ],
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "fastmap": {
      "Package": "fastmap",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Fast Data Structures",
      "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )",
      "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "Suggests": [
        "testthat (>= 2.1.1)"
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      "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap",
      "BugReports": "https://github.com/r-lib/fastmap/issues",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd], Tessil [cph] (hopscotch_map library)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
    "ff": {
      "Package": "ff",
      "Version": "4.5.2",
      "Source": "Repository",
      "Date": "2025-01-12",
      "Title": "Memory-Efficient Storage of Large Data on Disk and Fast Access Functions",
      "Authors@R": "c(person(given = \"Daniel\", family = \"Adler\", role = \"aut\"), person(given = \"Christian\", family = \"Gläser\", role = \"ctb\"), person(given = \"Oleg\", family = \"Nenadic\", role = \"ctb\"), person(given = \"Jens\", family = \"Oehlschlägel\", role = c(\"aut\", \"cre\"), email = \"Jens.Oehlschlaegel@truecluster.com\"), person(given = \"Martijn\", family = \"Schuemie\", role = \"ctb\"), person(given = \"Walter\", family = \"Zucchini\", role = \"ctb\"))",
      "Author": "Daniel Adler [aut], Christian Gläser [ctb], Oleg Nenadic [ctb], Jens Oehlschlägel [aut, cre], Martijn Schuemie [ctb], Walter Zucchini [ctb]",
      "Maintainer": "Jens Oehlschlägel <Jens.Oehlschlaegel@truecluster.com>",
      "Depends": [
        "R (>= 3.4.0)",
        "bit (>= 4.0.0)",
        "utils"
      ],
      "Suggests": [
        "biglm",
        "testthat (>= 0.11.0)",
        "markdown"
      ],
      "Description": "The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently  mapping only a section (pagesize) in main memory - the effective  virtual memory consumption per ff object. ff supports R's standard  atomic data types 'double', 'logical', 'raw' and 'integer' and  non-standard atomic types boolean (1 bit), quad (2 bit unsigned),  nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte  unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned),  single (4 byte float with NAs). For example 'quad' allows efficient  storage of genomic data as an 'A','T','G','C' factor. The unsigned  types support 'circular' arithmetic. There is also support for  close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and  custom close-to-atomic types.  ff not only has native C-support for vectors, matrices and arrays  with flexible dimorder (major column-order, major row-order and  generalizations for arrays). There is also a ffdf class not unlike  data.frames and import/export filters for csv files. ff objects store raw data in binary flat files in native encoding, and complement this with metadata stored in R as physical and virtual attributes. ff objects have well-defined hybrid copying semantics,  which gives rise to certain performance improvements through  virtualization. ff objects can be stored and reopened across R  sessions. ff files can be shared by multiple ff R objects  (using different data en/de-coding schemes) in the same process  or from multiple R processes to exploit parallelism. A wide choice of  finalizer options allows to work with 'permanent' files as well as  creating/removing 'temporary' ff files completely transparent to the  user. On certain OS/Filesystem combinations, creating the ff files works without notable delay thanks to using sparse file allocation. Several access optimization techniques such as Hybrid Index  Preprocessing and Virtualization are implemented to achieve good  performance even with large datasets, for example virtual matrix  transpose without touching a single byte on disk. Further, to reduce  disk I/O, 'logicals' and non-standard data types get stored native and  compact on binary flat files i.e. logicals take up exactly 2 bits to  represent TRUE, FALSE and NA.  Beyond basic access functions, the ff package also provides  compatibility functions that facilitate writing code for ff and ram  objects and support for batch processing on ff objects (e.g. as.ram,  as.ff, ffapply). ff interfaces closely with functionality from package  'bit': chunked looping, fast bit operations and coercions between  different objects that can store subscript information ('bit',  'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows to work interactively with selections of large datasets and quickly  modify selection criteria.  Further high-performance enhancements can be made available upon request.",
      "License": "GPL-2 | GPL-3 | file LICENSE",
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "NeedsCompilation": "yes",
      "Encoding": "UTF-8",
      "URL": "https://github.com/truecluster/ff",
      "Repository": "CRAN"
    },
    "flock": {
      "Package": "flock",
      "Version": "0.7",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Process Synchronization Using File Locks",
      "Date": "2016-11-10",
      "Author": "Ivan Popivanov",
      "Maintainer": "Ivan Popivanov <ivan.popivanov@gmail.com>",
      "Description": "Implements synchronization between R processes (spawned by using the \"parallel\" package for instance) using file locks. Supports both exclusive and shared locking.",
      "License": "Apache License 2.0",
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      "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"ctb\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome font\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/fontawesome, https://rstudio.github.io/fontawesome/",
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      "Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Winston Chang [ctb], Dave Gandy [ctb, cph] (Font-Awesome font), Posit Software, PBC [cph, fnd]",
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      "License": "Apache License (== 2.0)",
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      "Date": "2024-06-25",
      "Title": "Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...",
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      "Contact": "see 'MailingList'",
      "Copyright": "see file COPYRIGHTS",
      "Description": "Reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.",
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      "MailingList": "R-help@r-project.org",
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      "Author": "R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Swetlana Herbrandt [ctb], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Michael Nelson [ctb], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]",
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      "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
      "License": "MIT + file LICENSE",
      "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
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      "VignetteBuilder": "knitr",
      "SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
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      "Copyright": "file COPYRIGHTS",
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      "Author": "Jim Hester [aut], Hadley Wickham [aut], G<U+00E1>bor Cs<U+00E1>rdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
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      "Date": "2024-10-22",
      "Title": "Various R Programming Tools for Data Manipulation",
      "Authors@R": "c(person(c(\"Gregory\", \"R.\"), \"Warnes\", role=\"aut\", email=\"greg@warnes.net\"), person(\"Gregor\", \"Gorjanc\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=c(\"aut\",\"cre\"), email=\"thisisarni@gmail.com\"), person(\"Liviu\", \"Andronic\", role=\"aut\"), person(\"Jim\", \"Rogers\", role=\"aut\"), person(\"Don\", \"MacQueen\", role=\"aut\"), person(\"Ales\", \"Korosec\", role=\"aut\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Michael\", \"Chirico\", role=\"ctb\"), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Thomas\", \"Lumley\", role=\"ctb\"), person(\"Brian\", \"Ripley\", role=\"ctb\"), person(\"inoui llc\", role=\"fnd\"))",
      "Imports": [
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        "methods",
        "stats",
        "utils"
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      "Description": "Various R programming tools for data manipulation, including medical unit conversions, combining objects, character vector operations, factor manipulation, obtaining information about R objects, generating fixed-width format files, extracting components of date & time objects, operations on columns of data frames, matrix operations, operations on vectors, operations on data frames, value of last evaluated expression, and a resample() wrapper for sample() that ensures consistent behavior for both scalar and vector arguments.",
      "License": "GPL-3",
      "URL": "https://github.com/r-gregmisc/gdata",
      "BugReports": "https://github.com/r-gregmisc/gdata/issues",
      "NeedsCompilation": "no",
      "Author": "Gregory R. Warnes [aut], Gregor Gorjanc [aut], Arni Magnusson [aut, cre], Liviu Andronic [aut], Jim Rogers [aut], Don MacQueen [aut], Ales Korosec [aut], Ben Bolker [ctb], Michael Chirico [ctb], Gabor Grothendieck [ctb], Thomas Lumley [ctb], Brian Ripley [ctb], inoui llc [fnd]",
      "Maintainer": "Arni Magnusson <thisisarni@gmail.com>",
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      "Source": "Bioconductor",
      "Title": "Population Genetics",
      "Date": "2012-11-26",
      "Author": "Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man.",
      "Maintainer": "Gregory Warnes <greg@warnes.net>",
      "Depends": [
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        "gdata",
        "gtools",
        "MASS",
        "mvtnorm"
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      "Description": "Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...",
      "biocViews": "Genetics",
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      "Source": "Repository",
      "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
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      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Winston Chang [aut] (ORCID: <https://orcid.org/0000-0002-1576-2126>), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Kohske Takahashi [aut], Claus Wilke [aut] (ORCID: <https://orcid.org/0000-0002-7470-9261>), Kara Woo [aut] (ORCID: <https://orcid.org/0000-0002-5125-4188>), Hiroaki Yutani [aut] (ORCID: <https://orcid.org/0000-0002-3385-7233>), Dewey Dunnington [aut] (ORCID: <https://orcid.org/0000-0002-9415-4582>), Teun van den Brand [aut] (ORCID: <https://orcid.org/0000-0002-9335-7468>), Posit, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
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      "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'",
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      "Depends": [
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        "rlang (>= 1.1.6)",
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        "devtools",
        "prettydoc",
        "ggbeeswarm",
        "dplyr",
        "magrittr",
        "readr",
        "stringr",
        "marquee",
        "rsvg",
        "sf"
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      "License": "GPL-3 | file LICENSE",
      "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel",
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      "Author": "Kamil Slowikowski [aut, cre] (ORCID: <https://orcid.org/0000-0002-2843-6370>), Teun van den Brand [ctb] (ORCID: <https://orcid.org/0000-0002-9335-7468>), Alicia Schep [ctb] (ORCID: <https://orcid.org/0000-0002-3915-0618>), Sean Hughes [ctb] (ORCID: <https://orcid.org/0000-0002-9409-9405>), Trung Kien Dang [ctb] (ORCID: <https://orcid.org/0000-0001-7562-6495>), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (ORCID: <https://orcid.org/0000-0003-4920-3880>), Zhian N Kamvar [ctb] (ORCID: <https://orcid.org/0000-0003-1458-7108>), Thompson Ryan [ctb] (ORCID: <https://orcid.org/0000-0002-0450-8181>), Dervieux Christophe [ctb] (ORCID: <https://orcid.org/0000-0003-4474-2498>), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (ORCID: <https://orcid.org/0000-0003-0299-5825>), Robrecht Cannoodt [ctb] (ORCID: <https://orcid.org/0000-0003-3641-729X>), Micha<U+0142> Krassowski [ctb] (ORCID: <https://orcid.org/0000-0002-9638-7785>), Michael Chirico [ctb] (ORCID: <https://orcid.org/0000-0003-0787-087X>), Pedro Aphalo [ctb] (ORCID: <https://orcid.org/0000-0003-3385-972X>), Francis Barton [ctb]",
      "Maintainer": "Kamil Slowikowski <kslowikowski@gmail.com>",
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      "Version": "1.8.0",
      "Source": "Repository",
      "Title": "Interpreted String Literals",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings <https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals <https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.",
      "License": "MIT + file LICENSE",
      "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue",
      "BugReports": "https://github.com/tidyverse/glue/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "methods"
      ],
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        "DBI (>= 1.2.0)",
        "dplyr",
        "knitr",
        "magrittr",
        "rlang",
        "rmarkdown",
        "RSQLite",
        "testthat (>= 3.2.0)",
        "vctrs (>= 0.3.0)",
        "waldo (>= 0.5.3)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
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      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
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      "Version": "2.3",
      "Source": "Repository",
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      "License": "GPL (>= 2)",
      "Title": "Miscellaneous Functions for \"Grid\" Graphics",
      "Type": "Package",
      "Description": "Provides a number of user-level functions to work with \"grid\" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.",
      "VignetteBuilder": "knitr",
      "Imports": [
        "gtable",
        "grid",
        "grDevices",
        "graphics",
        "utils"
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        "egg",
        "lattice",
        "knitr",
        "testthat"
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      "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]",
      "Maintainer": "Baptiste Auguie <baptiste.auguie@gmail.com>",
      "Repository": "CRAN"
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      "Package": "gtable",
      "Version": "0.3.6",
      "Source": "Repository",
      "Title": "Arrange 'Grobs' in Tables",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.",
      "License": "MIT + file LICENSE",
      "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable",
      "BugReports": "https://github.com/r-lib/gtable/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "cli",
        "glue",
        "grid",
        "lifecycle",
        "rlang (>= 1.1.0)",
        "stats"
      ],
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        "covr",
        "ggplot2",
        "knitr",
        "profvis",
        "rmarkdown",
        "testthat (>= 3.0.0)"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2024-10-25",
      "Encoding": "UTF-8",
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      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "gtools": {
      "Package": "gtools",
      "Version": "3.9.5",
      "Source": "Repository",
      "Title": "Various R Programming Tools",
      "Description": "Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').",
      "Authors@R": "c(person(\"Gregory R.\", \"Warnes\", role = \"aut\"), person(\"Ben\", \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Thomas\", \"Lumley\", role = \"aut\"), person(\"Arni\", \"Magnusson\", role = \"aut\"), person(\"Bill\", \"Venables\", role = \"aut\"), person(\"Genei\", \"Ryodan\", role = \"aut\"), person(\"Steffen\", \"Moeller\", role = \"aut\"), person(\"Ian\", \"Wilson\", role = \"ctb\"), person(\"Mark\", \"Davis\", role = \"ctb\"), person(\"Nitin\", \"Jain\", role=\"ctb\"), person(\"Scott\", \"Chamberlain\", role = \"ctb\"))",
      "License": "GPL-2",
      "Depends": [
        "methods",
        "stats",
        "utils"
      ],
      "URL": "https://github.com/r-gregmisc/gtools",
      "BugReports": "https://github.com/r-gregmisc/gtools/issues",
      "Language": "en-US",
      "Suggests": [
        "car",
        "gplots",
        "knitr",
        "rstudioapi",
        "SGP",
        "taxize"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Gregory R. Warnes [aut], Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>), Thomas Lumley [aut], Arni Magnusson [aut], Bill Venables [aut], Genei Ryodan [aut], Steffen Moeller [aut], Ian Wilson [ctb], Mark Davis [ctb], Nitin Jain [ctb], Scott Chamberlain [ctb]",
      "Maintainer": "Ben Bolker <bolker@mcmaster.ca>",
      "Repository": "CRAN"
    },
    "highr": {
      "Package": "highr",
      "Version": "0.12",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Syntax Highlighting for R Source Code",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )",
      "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "xfun (>= 0.18)"
      ],
      "Suggests": [
        "knitr",
        "markdown",
        "testit"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/highr",
      "BugReports": "https://github.com/yihui/highr/issues",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "htmltools": {
      "Package": "htmltools",
      "Version": "0.5.9",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tools for HTML",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools for HTML generation and output.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/",
      "BugReports": "https://github.com/rstudio/htmltools/issues",
      "Depends": [
        "R (>= 2.14.1)"
      ],
      "Imports": [
        "base64enc",
        "digest",
        "fastmap (>= 1.1.0)",
        "grDevices",
        "rlang (>= 1.0.0)",
        "utils"
      ],
      "Suggests": [
        "Cairo",
        "markdown",
        "ragg",
        "shiny",
        "testthat",
        "withr"
      ],
      "Enhances": [
        "knitr"
      ],
      "Config/Needs/check": "knitr",
      "Config/Needs/website": "rstudio/quillt, bench",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: <https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Winston Chang [aut] (ORCID: <https://orcid.org/0000-0002-1576-2126>), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
    },
    "irlba": {
      "Package": "irlba",
      "Version": "2.3.7",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices",
      "Date": "2026-1-26",
      "Authors@R": "c( person(\"Jim\", \"Baglama\", role=c(\"aut\", \"cph\"), email=\"jbaglama@uri.edu\"), person(\"Lothar\", \"Reichel\", role=c(\"aut\", \"cph\"), email=\"reichel@math.kent.edu\"), person(\"B. W.\", \"Lewis\", role=c(\"aut\",\"cre\",\"cph\"), email=\"blewis@illposed.net\"))",
      "Description": "Fast and memory efficient methods for truncated singular value decomposition and principal components analysis of large sparse and dense matrices.",
      "Depends": [
        "R (>= 3.6.2)",
        "Matrix"
      ],
      "LinkingTo": [
        "Matrix"
      ],
      "Imports": [
        "stats",
        "methods"
      ],
      "License": "GPL-3",
      "BugReports": "https://github.com/bwlewis/irlba/issues",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Jim Baglama [aut, cph], Lothar Reichel [aut, cph], B. W. Lewis [aut, cre, cph]",
      "Maintainer": "B. W. Lewis <blewis@illposed.net>",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "isoband": {
      "Package": "isoband",
      "Version": "0.3.0",
      "Source": "Repository",
      "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.",
      "License": "MIT + file LICENSE",
      "URL": "https://isoband.r-lib.org, https://github.com/r-lib/isoband",
      "BugReports": "https://github.com/r-lib/isoband/issues",
      "Imports": [
        "cli",
        "grid",
        "rlang",
        "utils"
      ],
      "Suggests": [
        "covr",
        "ggplot2",
        "knitr",
        "magick",
        "bench",
        "rmarkdown",
        "sf",
        "testthat (>= 3.0.0)",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-12-05",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "Config/build/compilation-database": "true",
      "LinkingTo": [
        "cpp11"
      ],
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Claus O. Wilke [aut] (Original author, ORCID: <https://orcid.org/0000-0002-7470-9261>), Thomas Lin Pedersen [aut, cre] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Posit, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "iterators": {
      "Package": "iterators",
      "Version": "1.0.14",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Provides Iterator Construct",
      "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Revolution\", \"Analytics\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))",
      "Description": "Support for iterators, which allow a programmer to traverse through all the elements of a vector, list, or other collection of data.",
      "URL": "https://github.com/RevolutionAnalytics/iterators",
      "Depends": [
        "R (>= 2.5.0)",
        "utils"
      ],
      "Suggests": [
        "RUnit",
        "foreach"
      ],
      "License": "Apache License (== 2.0)",
      "NeedsCompilation": "no",
      "Author": "Folashade Daniel [cre], Revolution Analytics [aut, cph], Steve Weston [aut]",
      "Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
      "Repository": "CRAN"
    },
    "jquerylib": {
      "Package": "jquerylib",
      "Version": "0.1.4",
      "Source": "Repository",
      "Title": "Obtain 'jQuery' as an HTML Dependency Object",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )",
      "Description": "Obtain any major version of 'jQuery' (<https://code.jquery.com/>) and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Config/testthat/edition": "3",
      "RoxygenNote": "7.0.2",
      "Imports": [
        "htmltools"
      ],
      "Suggests": [
        "testthat"
      ],
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "jsonlite": {
      "Package": "jsonlite",
      "Version": "2.0.0",
      "Source": "Repository",
      "Title": "A Simple and Robust JSON Parser and Generator for R",
      "License": "MIT + file LICENSE",
      "Depends": [
        "methods"
      ],
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))",
      "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805",
      "BugReports": "https://github.com/jeroen/jsonlite/issues",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "VignetteBuilder": "knitr, R.rsp",
      "Description": "A reasonably fast JSON parser and generator, optimized for statistical  data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API.  The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains  functions to stream, validate, and prettify JSON data. The unit tests included  with the package verify that all edge cases are encoded and decoded consistently  for use with dynamic data in systems and applications.",
      "Suggests": [
        "httr",
        "vctrs",
        "testthat",
        "knitr",
        "rmarkdown",
        "R.rsp",
        "sf"
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      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)",
      "Repository": "CRAN"
    },
    "knitr": {
      "Package": "knitr",
      "Version": "1.51",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A General-Purpose Package for Dynamic Report Generation in R",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "evaluate (>= 0.15)",
        "highr (>= 0.11)",
        "methods",
        "tools",
        "xfun (>= 0.52)",
        "yaml (>= 2.1.19)"
      ],
      "Suggests": [
        "bslib",
        "DBI (>= 0.4-1)",
        "digest",
        "formatR",
        "gifski",
        "gridSVG",
        "htmlwidgets (>= 0.7)",
        "jpeg",
        "JuliaCall (>= 0.11.1)",
        "magick",
        "litedown",
        "markdown (>= 1.3)",
        "otel",
        "otelsdk",
        "png",
        "ragg",
        "reticulate (>= 1.4)",
        "rgl (>= 0.95.1201)",
        "rlang",
        "rmarkdown",
        "sass",
        "showtext",
        "styler (>= 1.2.0)",
        "targets (>= 0.6.0)",
        "testit",
        "tibble",
        "tikzDevice (>= 0.10)",
        "tinytex (>= 0.56)",
        "webshot",
        "rstudioapi",
        "svglite"
      ],
      "License": "GPL",
      "URL": "https://yihui.org/knitr/",
      "BugReports": "https://github.com/yihui/knitr/issues",
      "Encoding": "UTF-8",
      "VignetteBuilder": "litedown, knitr",
      "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).",
      "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: <https://orcid.org/0000-0002-8335-495X>), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: <https://orcid.org/0000-0002-9101-3362>), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: <https://orcid.org/0000-0003-1413-3974>), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: <https://orcid.org/0000-0003-1458-7108>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "labeling": {
      "Package": "labeling",
      "Version": "0.4.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Axis Labeling",
      "Date": "2023-08-29",
      "Author": "Justin Talbot,",
      "Maintainer": "Nuno Sempere <nuno.semperelh@gmail.com>",
      "Description": "Functions which provide a range of axis labeling algorithms.",
      "License": "MIT + file LICENSE | Unlimited",
      "Collate": "'labeling.R'",
      "NeedsCompilation": "no",
      "Imports": [
        "stats",
        "graphics"
      ],
      "Repository": "CRAN"
    },
    "lattice": {
      "Package": "lattice",
      "Version": "0.22-6",
      "Source": "Repository",
      "Date": "2024-03-20",
      "Priority": "recommended",
      "Title": "Trellis Graphics for R",
      "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )",
      "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Suggests": [
        "KernSmooth",
        "MASS",
        "latticeExtra",
        "colorspace"
      ],
      "Imports": [
        "grid",
        "grDevices",
        "graphics",
        "stats",
        "utils"
      ],
      "Enhances": [
        "chron",
        "zoo"
      ],
      "LazyLoad": "yes",
      "LazyData": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://lattice.r-forge.r-project.org/",
      "BugReports": "https://github.com/deepayan/lattice/issues",
      "NeedsCompilation": "yes",
      "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)",
      "Maintainer": "Deepayan Sarkar <deepayan.sarkar@r-project.org>",
      "Repository": "CRAN"
    },
    "lifecycle": {
      "Package": "lifecycle",
      "Version": "1.0.5",
      "Source": "Repository",
      "Title": "Manage the Life Cycle of your Package Functions",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.",
      "License": "MIT + file LICENSE",
      "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle",
      "BugReports": "https://github.com/r-lib/lifecycle/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "rlang (>= 1.1.0)"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "lintr (>= 3.1.0)",
        "rmarkdown",
        "testthat (>= 3.0.1)",
        "tibble",
        "tidyverse",
        "tools",
        "vctrs",
        "withr",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate, usethis",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
    },
    "magrittr": {
      "Package": "magrittr",
      "Version": "2.0.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Forward-Pipe Operator for R",
      "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"cre\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette.  To quote Rene Magritte, \"Ceci n'est pas un pipe.\"",
      "License": "MIT + file LICENSE",
      "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr",
      "BugReports": "https://github.com/tidyverse/magrittr/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rlang",
        "rmarkdown",
        "testthat"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "Yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
    },
    "matrixStats": {
      "Package": "matrixStats",
      "Version": "1.5.0",
      "Source": "Repository",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Suggests": [
        "utils",
        "base64enc",
        "ggplot2",
        "knitr",
        "markdown",
        "microbenchmark",
        "R.devices",
        "R.rsp"
      ],
      "VignetteBuilder": "R.rsp",
      "Title": "Functions that Apply to Rows and Columns of Matrices (and to Vectors)",
      "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Constantin\", \"Ahlmann-Eltze\", role = \"ctb\"), person(\"Hector\", \"Corrada Bravo\", role=\"ctb\"), person(\"Robert\", \"Gentleman\", role=\"ctb\"), person(\"Jan\", \"Gleixner\", role=\"ctb\"), person(\"Peter\", \"Hickey\", role=\"ctb\"), person(\"Ola\", \"Hossjer\", role=\"ctb\"), person(\"Harris\", \"Jaffee\", role=\"ctb\"), person(\"Dongcan\", \"Jiang\", role=\"ctb\"), person(\"Peter\", \"Langfelder\", role=\"ctb\"), person(\"Brian\", \"Montgomery\", role=\"ctb\"), person(\"Angelina\", \"Panagopoulou\", role=\"ctb\"), person(\"Hugh\", \"Parsonage\", role=\"ctb\"), person(\"Jakob Peder\", \"Pettersen\", role=\"ctb\"))",
      "Author": "Henrik Bengtsson [aut, cre, cph], Constantin Ahlmann-Eltze [ctb], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Jan Gleixner [ctb], Peter Hickey [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Brian Montgomery [ctb], Angelina Panagopoulou [ctb], Hugh Parsonage [ctb], Jakob Peder Pettersen [ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Description": "High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds().  Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.  There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().",
      "License": "Artistic-2.0",
      "LazyLoad": "TRUE",
      "NeedsCompilation": "yes",
      "ByteCompile": "TRUE",
      "URL": "https://github.com/HenrikBengtsson/matrixStats",
      "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues",
      "RoxygenNote": "7.3.2",
      "Repository": "CRAN"
    },
    "memoise": {
      "Package": "memoise",
      "Version": "2.0.1",
      "Source": "Repository",
      "Title": "'Memoisation' of Functions",
      "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))",
      "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.",
      "License": "MIT + file LICENSE",
      "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise",
      "BugReports": "https://github.com/r-lib/memoise/issues",
      "Imports": [
        "rlang (>= 0.4.10)",
        "cachem"
      ],
      "Suggests": [
        "digest",
        "aws.s3",
        "covr",
        "googleAuthR",
        "googleCloudStorageR",
        "httr",
        "testthat"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]",
      "Maintainer": "Winston Chang <winston@rstudio.com>",
      "Repository": "CRAN"
    },
    "mgcv": {
      "Package": "mgcv",
      "Version": "1.9-1",
      "Source": "Repository",
      "Author": "Simon Wood <simon.wood@r-project.org>",
      "Maintainer": "Simon Wood <simon.wood@r-project.org>",
      "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
      "Description": "Generalized additive (mixed) models, some of their extensions and  other generalized ridge regression with multiple smoothing  parameter estimation by (Restricted) Marginal Likelihood,  Generalized Cross Validation and similar, or using iterated  nested Laplace approximation for fully Bayesian inference. See  Wood (2017) <doi:10.1201/9781315370279> for an overview.  Includes a gam() function, a wide variety of smoothers, 'JAGS'  support and distributions beyond the exponential family.",
      "Priority": "recommended",
      "Depends": [
        "R (>= 3.6.0)",
        "nlme (>= 3.1-64)"
      ],
      "Imports": [
        "methods",
        "stats",
        "graphics",
        "Matrix",
        "splines",
        "utils"
      ],
      "Suggests": [
        "parallel",
        "survival",
        "MASS"
      ],
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      "ByteCompile": "yes",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "mime": {
      "Package": "mime",
      "Version": "0.13",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Map Filenames to MIME Types",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )",
      "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.",
      "Imports": [
        "tools"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/mime",
      "BugReports": "https://github.com/yihui/mime/issues",
      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
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      "Package": "mixsqp",
      "Version": "0.3-54",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Date": "2023-12-20",
      "Title": "Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions",
      "Authors@R": "c(person(\"Youngseok\",\"Kim\",role=\"aut\", email=\"youngseok@uchicago.edu\"), person(\"Peter\",\"Carbonetto\",role=c(\"aut\",\"cre\"), email=\"peter.carbonetto@gmail.com\"), person(\"Mihai\",\"Anitescu\",role=\"aut\"), person(\"Matthew\",\"Stephens\",role=\"aut\"), person(\"Jason\",\"Willwerscheid\",role=\"ctb\"), person(\"Jean\",\"Morrison\",role=\"ctb\"))",
      "URL": "https://github.com/stephenslab/mixsqp",
      "BugReports": "https://github.com/stephenslab/mixsqp/issues",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Description": "Provides an optimization method based on sequential quadratic programming (SQP) for maximum likelihood estimation of the mixture proportions in a finite mixture model where the component densities are known. The algorithm is expected to obtain solutions that are at least as accurate as the state-of-the-art MOSEK interior-point solver (called by function \"KWDual\" in the 'REBayes' package), and they are expected to arrive at solutions more quickly when the number of samples is large and the number of mixture components is not too large. This implements the \"mix-SQP\" algorithm, with some improvements, described in Y. Kim, P. Carbonetto, M. Stephens & M. Anitescu (2020) <DOI:10.1080/10618600.2019.1689985>.",
      "License": "MIT + file LICENSE",
      "Imports": [
        "utils",
        "stats",
        "irlba",
        "Rcpp (>= 0.12.15)"
      ],
      "Suggests": [
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        "knitr",
        "rmarkdown"
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      "LinkingTo": [
        "Rcpp",
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      "LazyData": "true",
      "NeedsCompilation": "yes",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.1.2",
      "Author": "Youngseok Kim [aut], Peter Carbonetto [aut, cre], Mihai Anitescu [aut], Matthew Stephens [aut], Jason Willwerscheid [ctb], Jean Morrison [ctb]",
      "Maintainer": "Peter Carbonetto <peter.carbonetto@gmail.com>",
      "Repository": "CRAN"
    },
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      "Package": "mvtnorm",
      "Version": "1.3-6",
      "Source": "Repository",
      "Title": "Multivariate Normal and t Distributions",
      "Date": "2026-03-13",
      "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))",
      "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates,  and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae  parameterised by Cholesky factors of covariance or precision matrices are implemented  for interval-censored and exact data, or a mix thereof. Score functions for these  log-likelihoods are available. A class representing multiple lower triangular matrices  and corresponding methods are part of this package.",
      "Imports": [
        "stats"
      ],
      "Depends": [
        "R(>= 3.5.0)"
      ],
      "Suggests": [
        "qrng",
        "numDeriv",
        "bibtex"
      ],
      "License": "GPL-2",
      "URL": "http://mvtnorm.R-forge.R-project.org",
      "NeedsCompilation": "yes",
      "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: <https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (ORCID: <https://orcid.org/0000-0001-8301-0471>)",
      "Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
      "Repository": "CRAN"
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      "Version": "0.5.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions",
      "Author": "Stephane Mangenat (for 'libnabo'), Gregory Jefferis",
      "Maintainer": "Gregory Jefferis <jefferis@gmail.com>",
      "Description": "An R wrapper for 'libnabo', an exact or approximate k nearest neighbour library which is optimised for low dimensional spaces (e.g. 3D). 'libnabo' has speed and space advantages over the 'ANN' library wrapped by package 'RANN'. 'nabor' includes a knn function that is designed as a  drop-in replacement for 'RANN' function nn2. In addition, objects which  include the k-d tree search structure can be returned to speed up repeated  queries of the same set of target points.",
      "License": "BSD_3_clause + file LICENSE",
      "Copyright": "libnabo is copyright 2010--2011, Stephane Magnenat, ASL, ETHZ, Switzerland <stephane at magnenat dot net>",
      "URL": "https://github.com/jefferis/nabor https://github.com/ethz-asl/libnabo",
      "BugReports": "https://github.com/jefferis/nabor/issues",
      "Depends": [
        "R (>= 3.0.2)"
      ],
      "Imports": [
        "Rcpp (>= 0.11.2)",
        "methods"
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        "RcppEigen (>= 0.3.2.2.0)",
        "BH (>= 1.54.0-4)"
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        "testthat",
        "RANN"
      ],
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Package": "nlme",
      "Version": "3.1-166",
      "Source": "Repository",
      "Date": "2024-08-13",
      "Priority": "recommended",
      "Title": "Linear and Nonlinear Mixed Effects Models",
      "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\")))",
      "Contact": "see 'MailingList'",
      "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "graphics",
        "stats",
        "utils",
        "lattice"
      ],
      "Suggests": [
        "MASS",
        "SASmixed"
      ],
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "License": "GPL (>= 2)",
      "BugReports": "https://bugs.r-project.org",
      "MailingList": "R-help@r-project.org",
      "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
      "NeedsCompilation": "yes",
      "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre]",
      "Maintainer": "R Core Team <R-core@R-project.org>",
      "Repository": "CRAN"
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    "nnet": {
      "Package": "nnet",
      "Version": "7.3-19",
      "Source": "Repository",
      "Priority": "recommended",
      "Date": "2023-05-02",
      "Depends": [
        "R (>= 3.0.0)",
        "stats",
        "utils"
      ],
      "Suggests": [
        "MASS"
      ],
      "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"ripley@stats.ox.ac.uk\"), person(\"William\", \"Venables\", role = \"cph\"))",
      "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.",
      "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models",
      "ByteCompile": "yes",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "NeedsCompilation": "yes",
      "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]",
      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
      "Repository": "CRAN"
    },
    "parallelly": {
      "Package": "parallelly",
      "Version": "1.46.1",
      "Source": "Repository",
      "Title": "Enhancing the 'parallel' Package",
      "Imports": [
        "parallel",
        "tools",
        "utils"
      ],
      "Suggests": [
        "commonmark",
        "base64enc"
      ],
      "VignetteBuilder": "parallelly",
      "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Mike\", \"Cheng\", role = c(\"ctb\"), email = \"mikefc@coolbutuseless.com\") )",
      "Description": "Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package.  For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "ByteCompile": "TRUE",
      "URL": "https://parallelly.futureverse.org, https://github.com/futureverse/parallelly",
      "BugReports": "https://github.com/futureverse/parallelly/issues",
      "Language": "en-US",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-7579-5165>), Mike Cheng [ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
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      "Package": "pillar",
      "Version": "1.11.1",
      "Source": "Repository",
      "Title": "Coloured Formatting for Columns",
      "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))",
      "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.",
      "License": "MIT + file LICENSE",
      "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar",
      "BugReports": "https://github.com/r-lib/pillar/issues",
      "Imports": [
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        "glue",
        "lifecycle",
        "rlang (>= 1.0.2)",
        "utf8 (>= 1.1.0)",
        "utils",
        "vctrs (>= 0.5.0)"
      ],
      "Suggests": [
        "bit64",
        "DBI",
        "debugme",
        "DiagrammeR",
        "dplyr",
        "formattable",
        "ggplot2",
        "knitr",
        "lubridate",
        "nanotime",
        "nycflights13",
        "palmerpenguins",
        "rmarkdown",
        "scales",
        "stringi",
        "survival",
        "testthat (>= 3.1.1)",
        "tibble",
        "units (>= 0.7.2)",
        "vdiffr",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3.9000",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "true",
      "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], RStudio [cph]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
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    "pkgbuild": {
      "Package": "pkgbuild",
      "Version": "1.4.8",
      "Source": "Repository",
      "Title": "Find Tools Needed to Build R Packages",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org",
      "BugReports": "https://github.com/r-lib/pkgbuild/issues",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "callr (>= 3.2.0)",
        "cli (>= 3.4.0)",
        "desc",
        "processx",
        "R6"
      ],
      "Suggests": [
        "covr",
        "cpp11",
        "knitr",
        "Rcpp",
        "rmarkdown",
        "testthat (>= 3.2.0)",
        "withr (>= 2.3.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-04-30",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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    "pkgconfig": {
      "Package": "pkgconfig",
      "Version": "2.0.3",
      "Source": "Repository",
      "Title": "Private Configuration for 'R' Packages",
      "Author": "Gábor Csárdi",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "covr",
        "testthat",
        "disposables (>= 1.0.3)"
      ],
      "URL": "https://github.com/r-lib/pkgconfig#readme",
      "BugReports": "https://github.com/r-lib/pkgconfig/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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      "Package": "pkgload",
      "Version": "1.5.1",
      "Source": "Repository",
      "Title": "Simulate Package Installation and Attach",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )",
      "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org",
      "BugReports": "https://github.com/r-lib/pkgload/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
        "cli (>= 3.3.0)",
        "desc",
        "fs",
        "glue",
        "lifecycle",
        "methods",
        "pkgbuild",
        "processx",
        "rlang (>= 1.1.1)",
        "rprojroot",
        "utils"
      ],
      "Suggests": [
        "bitops",
        "jsonlite",
        "mathjaxr",
        "pak",
        "Rcpp",
        "remotes",
        "rstudioapi",
        "testthat (>= 3.2.1.1)",
        "usethis",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate, ggplot2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Config/testthat/start-first": "dll",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "https://packagemanager.posit.co/cran/latest"
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      "Package": "plyr",
      "Version": "1.8.9",
      "Source": "Repository",
      "Title": "Tools for Splitting, Applying and Combining Data",
      "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))",
      "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together.  For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.",
      "License": "MIT + file LICENSE",
      "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr",
      "BugReports": "https://github.com/hadley/plyr/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "Rcpp (>= 0.11.0)"
      ],
      "Suggests": [
        "abind",
        "covr",
        "doParallel",
        "foreach",
        "iterators",
        "itertools",
        "tcltk",
        "testthat"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "praise": {
      "Package": "praise",
      "Version": "1.0.0",
      "Source": "Repository",
      "Title": "Praise Users",
      "Author": "Gabor Csardi, Sindre Sorhus",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Description": "Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "URL": "https://github.com/gaborcsardi/praise",
      "BugReports": "https://github.com/gaborcsardi/praise/issues",
      "Suggests": [
        "testthat"
      ],
      "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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      "Package": "prettyunits",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Pretty, Human Readable Formatting of Quantities",
      "Authors@R": "c( person(\"Gabor\", \"Csardi\", email=\"csardi.gabor@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email=\"wdenney@humanpredictions.com\", role=c(\"ctb\"), comment=c(ORCID=\"0000-0002-5759-428X\")), person(\"Christophe\", \"Regouby\", email=\"christophe.regouby@free.fr\", role=c(\"ctb\")) )",
      "Description": "Pretty, human readable formatting of quantities. Time intervals: '1337000' -> '15d 11h 23m 20s'. Vague time intervals: '2674000' -> 'about a month ago'. Bytes: '1337' -> '1.34 kB'. Rounding: '99' with 3 significant digits -> '99.0' p-values: '0.00001' -> '<0.0001'. Colors: '#FF0000' -> 'red'. Quantities: '1239437' -> '1.24 M'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/prettyunits",
      "BugReports": "https://github.com/r-lib/prettyunits/issues",
      "Depends": [
        "R(>= 2.10)"
      ],
      "Suggests": [
        "codetools",
        "covr",
        "testthat"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Gabor Csardi [aut, cre], Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>), Christophe Regouby [ctb]",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "processx": {
      "Package": "processx",
      "Version": "3.8.7",
      "Source": "Repository",
      "Title": "Execute and Control System Processes",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools to run system processes in the background.  It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.",
      "License": "MIT + file LICENSE",
      "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx",
      "BugReports": "https://github.com/r-lib/processx/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
        "ps (>= 1.2.0)",
        "R6",
        "utils"
      ],
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        "callr (>= 3.7.3)",
        "cli (>= 3.3.0)",
        "codetools",
        "covr",
        "curl",
        "debugme",
        "parallel",
        "rlang (>= 1.0.2)",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
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      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-04-25",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-7098-9676>), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>), Ascent Digital Services [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "https://packagemanager.posit.co/cran/latest"
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      "Version": "1.9.2",
      "Source": "Repository",
      "Title": "List, Query, Manipulate System Processes",
      "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"G<U+00E1>bor\", \"Cs<U+00E1>rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/",
      "BugReports": "https://github.com/r-lib/ps/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "callr",
        "covr",
        "curl",
        "pillar",
        "pingr",
        "processx (>= 3.1.0)",
        "R6",
        "rlang",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "Biarch": "true",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-04-28",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], G<U+00E1>bor Cs<U+00E1>rdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "G<U+00E1>bor Cs<U+00E1>rdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Version": "1.2.1",
      "Source": "Repository",
      "Title": "Functional Programming Tools",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )",
      "Description": "A complete and consistent functional programming toolkit for R.",
      "License": "MIT + file LICENSE",
      "URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr",
      "BugReports": "https://github.com/tidyverse/purrr/issues",
      "Depends": [
        "R (>= 4.1)"
      ],
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        "lifecycle (>= 1.0.3)",
        "magrittr (>= 1.5.0)",
        "rlang (>= 1.1.1)",
        "vctrs (>= 0.6.3)"
      ],
      "Suggests": [
        "carrier (>= 0.3.0)",
        "covr",
        "dplyr (>= 0.7.8)",
        "httr",
        "knitr",
        "lubridate",
        "mirai (>= 2.5.1)",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "tibble",
        "tidyselect"
      ],
      "LinkingTo": [
        "cli"
      ],
      "VignetteBuilder": "knitr",
      "Biarch": "true",
      "Config/build/compilation-database": "true",
      "Config/Needs/website": "tidyverse/tidytemplate, tidyr",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
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      "Version": "0.3.4",
      "Source": "Repository",
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      "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"trl\", \"cre\", \"cph\")), person(\"Sridhar\", \"Ratnakumar\", role = \"aut\"), person(\"Trent\", \"Mick\", role = \"aut\"), person(\"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(\"Eddy\", \"Petrisor\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = c(\"trl\", \"aut\"), comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Gabor\", \"Csardi\", role = \"ctb\"), person(\"Gregory\", \"Jefferis\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' (<https://github.com/ActiveState/appdirs>) to R.",
      "License": "MIT + file LICENSE",
      "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs",
      "BugReports": "https://github.com/r-lib/rappdirs/issues",
      "Depends": [
        "R (>= 4.1)"
      ],
      "Suggests": [
        "covr",
        "roxygen2",
        "testthat (>= 3.2.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-05-05",
      "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, Posit, PBC.  See file LICENSE for details.",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [trl, cre, cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut] (ORCID: <https://orcid.org/0000-0001-6341-4639>), Gabor Csardi [ctb], Gregory Jefferis [ctb], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
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      "Version": "1.4.0",
      "Source": "Repository",
      "Title": "Run 'R CMD check' from 'R' and Capture Results",
      "Authors@R": "person(given = \"Gábor\", family = \"Csárdi\", role = c(\"cre\", \"aut\"), email = \"csardi.gabor@gmail.com\")",
      "Description": "Run 'R CMD check' from 'R' and capture the results of the individual checks. Supports running checks in the background, timeouts, pretty printing and comparing check results.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/rcmdcheck/, https://github.com/r-Lib/rcmdcheck#readme",
      "BugReports": "https://github.com/r-Lib/rcmdcheck/issues",
      "Imports": [
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        "cli (>= 3.0.0)",
        "curl",
        "desc (>= 1.2.0)",
        "digest",
        "pkgbuild",
        "prettyunits",
        "R6",
        "rprojroot",
        "sessioninfo (>= 1.1.1)",
        "utils",
        "withr",
        "xopen"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "mockery",
        "processx",
        "ps",
        "rmarkdown",
        "svglite",
        "testthat",
        "webfakes"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [cre, aut]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "remotes": {
      "Package": "remotes",
      "Version": "2.5.0",
      "Source": "Repository",
      "Title": "R Package Installation from Remote Repositories, Including 'GitHub'",
      "Authors@R": "c( person(\"G<U+00E1>bor\", \"Cs<U+00E1>rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )",
      "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories.  This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.",
      "License": "MIT + file LICENSE",
      "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme",
      "BugReports": "https://github.com/r-lib/remotes/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "methods",
        "stats",
        "tools",
        "utils"
      ],
      "Suggests": [
        "brew",
        "callr",
        "codetools",
        "covr",
        "curl",
        "git2r (>= 0.23.0)",
        "knitr",
        "mockery",
        "pingr",
        "pkgbuild (>= 1.0.1)",
        "rmarkdown",
        "rprojroot",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "Subversion for install_svn, git for install_git",
      "NeedsCompilation": "no",
      "Author": "G<U+00E1>bor Cs<U+00E1>rdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]",
      "Maintainer": "G<U+00E1>bor Cs<U+00E1>rdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "renv": {
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      "Version": "1.1.8",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Project Environments",
      "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@rstudio.com\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/renv/, https://github.com/rstudio/renv",
      "BugReports": "https://github.com/rstudio/renv/issues",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "BiocManager",
        "cli",
        "compiler",
        "covr",
        "cpp11",
        "curl",
        "devtools",
        "generics",
        "gitcreds",
        "jsonlite",
        "jsonvalidate",
        "knitr",
        "miniUI",
        "modules",
        "packrat",
        "pak",
        "R6",
        "remotes",
        "reticulate",
        "rmarkdown",
        "rstudioapi",
        "shiny",
        "testthat",
        "uuid",
        "waldo",
        "yaml",
        "webfakes"
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      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "VignetteBuilder": "knitr",
      "NeedsCompilation": "yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
      "Author": "Kevin Ushey [aut, cre] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
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      "Repository": "CRAN"
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      "Version": "0.8.10",
      "Source": "Repository",
      "Title": "Flexibly Reshape Data",
      "Description": "Flexibly restructure and aggregate data using  just two functions: melt and cast.",
      "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", c(\"aut\", \"cre\"))",
      "URL": "http://had.co.nz/reshape",
      "Depends": [
        "R (>= 2.6.1)"
      ],
      "Imports": [
        "plyr"
      ],
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
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      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
      "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\", role = \"cph\", comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\", comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "ByteCompile": "true",
      "Biarch": "true",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "cli (>= 3.1.0)",
        "covr",
        "crayon",
        "desc",
        "fs",
        "glue",
        "knitr",
        "magrittr",
        "methods",
        "pillar",
        "pkgload",
        "rmarkdown",
        "stats",
        "testthat (>= 3.3.2)",
        "tibble",
        "usethis",
        "vctrs (>= 0.2.3)",
        "withr"
      ],
      "Enhances": [
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      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang",
      "BugReports": "https://github.com/r-lib/rlang/issues",
      "Config/build/compilation-database": "true",
      "Config/testthat/edition": "3",
      "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
      "NeedsCompilation": "yes",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], mikefc [cph] (Hash implementation based on Mike's xxhashlite), Yann Collet [cph] (Author of the embedded xxHash library), Posit, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
    },
    "rmarkdown": {
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      "Version": "2.31",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Dynamic Documents for R",
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      "Description": "Convert R Markdown documents into a variety of formats.",
      "License": "GPL-3",
      "URL": "https://github.com/rstudio/rmarkdown, https://pkgs.rstudio.com/rmarkdown/",
      "BugReports": "https://github.com/rstudio/rmarkdown/issues",
      "Depends": [
        "R (>= 3.0)"
      ],
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        "evaluate (>= 0.13)",
        "fontawesome (>= 0.5.0)",
        "htmltools (>= 0.5.1)",
        "jquerylib",
        "jsonlite",
        "knitr (>= 1.43)",
        "methods",
        "tinytex (>= 0.31)",
        "tools",
        "utils",
        "xfun (>= 0.36)",
        "yaml (>= 2.1.19)"
      ],
      "Suggests": [
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        "dygraphs",
        "fs",
        "rsconnect",
        "downlit (>= 0.4.0)",
        "katex (>= 1.4.0)",
        "sass (>= 0.4.0)",
        "shiny (>= 1.6.0)",
        "testthat (>= 3.0.3)",
        "tibble",
        "vctrs",
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        "withr (>= 2.4.2)",
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "rstudio/quillt, pkgdown",
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      "Encoding": "UTF-8",
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      "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org",
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      "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [aut] (ORCID: <https://orcid.org/0000-0003-4474-2498>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: <https://orcid.org/0000-0003-3925-190X>), Andrew Dunning [ctb] (ORCID: <https://orcid.org/0000-0003-0464-5036>), Atsushi Yasumoto [ctb, cph] (ORCID: <https://orcid.org/0000-0002-8335-495X>, cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: <https://orcid.org/0000-0002-4958-2844>), Devon Ryan [ctb] (ORCID: <https://orcid.org/0000-0002-8549-0971>), Frederik Aust [ctb] (ORCID: <https://orcid.org/0000-0003-4900-788X>), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: <https://orcid.org/0000-0002-4064-6012>), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)",
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      "Repository": "CRAN"
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      "Package": "rmio",
      "Version": "0.4.0",
      "Source": "Repository",
      "Title": "Provides 'mio' C++11 Header Files",
      "Authors@R": "person(given = \"Florian\", family = \"Privé\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "Description": "Provides header files of 'mio', a cross-platform C++11 header-only  library for memory mapped file IO <https://github.com/mandreyel/mio>.",
      "License": "GPL-3",
      "Copyright": "file COPYRIGHTS",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "URL": "https://github.com/privefl/rmio",
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      "Imports": [
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        "ff"
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      "NeedsCompilation": "no",
      "Author": "Florian Privé [aut, cre]",
      "Maintainer": "Florian Privé <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
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      "Version": "1.5.2",
      "Source": "Repository",
      "Authors@R": "c(person(\"Renaud\", \"Gaujoux\", email = \"renozao@protonmail.com\", role = c(\"aut\", \"cre\")), person(\"Max\", \"Kuhn\", role = \"ctb\"))",
      "License": "GPL-3",
      "Title": "Utility Functions for Working with Random Number Generators",
      "Description": "Provides a set of functions for working with Random Number Generators (RNGs). In particular, a generic S4 framework is defined for getting/setting the current RNG, or RNG data that are embedded into objects for reproducibility. Notably, convenient default methods greatly facilitate the way current RNG settings can be changed.",
      "URL": "https://renozao.github.io/rngtools/",
      "BugReports": "https://github.com/renozao/rngtools/issues",
      "Encoding": "UTF-8",
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        "methods"
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      "Imports": [
        "digest",
        "utils",
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        "parallel"
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      "RoxygenNote": "7.0.2",
      "NeedsCompilation": "no",
      "Author": "Renaud Gaujoux [aut, cre], Max Kuhn [ctb]",
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      "Repository": "CRAN"
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      "Version": "0.99-7",
      "Source": "Repository",
      "VersionNote": "Released 0.99-6 on 2025-09-03, 0.99-5 on 2024-11-01, 0.99-4-1 on 2024-09-24, 0.99-4 on 2024-08-19 to CRAN",
      "Date": "2026-02-03",
      "Title": "Basic Robust Statistics",
      "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Peter\", \"Rousseeuw\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Christophe\", \"Croux\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Valentin\", \"Todorov\", role = \"aut\", email = \"valentin.todorov@chello.at\", comment = \"most robust Cov\") , person(\"Andreas\", \"Ruckstuhl\", role = \"aut\", email = \"andreas.ruckstuhl@zhaw.ch\", comment = \"nlrob, anova, glmrob\") , person(\"Matias\", \"Salibian-Barrera\", role = \"aut\", email = \"matias@stat.ubc.ca\", comment = \"lmrob orig.\") , person(\"Tobias\", \"Verbeke\", role = c(\"ctb\",\"fnd\"), email = \"tobias.verbeke@openanalytics.eu\", comment = \"mc, adjbox\") , person(\"Manuel\", \"Koller\", role = \"aut\", email = \"koller.manuel@gmail.com\", comment = \"mc, lmrob, psi-func.\") , person(c(\"Eduardo\", \"L. T.\"), \"Conceicao\", role = \"aut\", email = \"mail@eduardoconceicao.org\", comment = \"MM-, tau-, CM-, and MTL- nlrob\") , person(\"Maria\", \"Anna di Palma\", role = \"ctb\", comment = \"initial version of Comedian\") )",
      "URL": "https://robustbase.R-forge.R-project.org/, https://R-forge.R-project.org/R/?group_id=59, https://R-forge.R-project.org/scm/viewvc.php/pkg/robustbase/?root=robustbase, svn://svn.r-forge.r-project.org/svnroot/robustbase/pkg/robustbase",
      "BugReports": "https://R-forge.R-project.org/tracker/?atid=302&group_id=59",
      "Description": "\"Essential\" Robust Statistics. Tools allowing to analyze data with robust methods.  This includes regression methodology including model selections and multivariate statistics where we strive to cover the book \"Robust Statistics, Theory and Methods\" by 'Maronna, Martin and Yohai'; Wiley 2006.",
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        "xtable",
        "ggplot2",
        "GGally",
        "RColorBrewer",
        "reshape2",
        "sfsmisc",
        "catdata",
        "doParallel",
        "foreach",
        "skewt"
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        "rrcov",
        "matrixStats",
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        "Hmisc"
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      "EnhancesNote": "linked to in man/*.Rd",
      "LazyData": "yes",
      "NeedsCompilation": "yes",
      "License": "GPL (>= 2)",
      "Author": "Martin Maechler [aut, cre] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Peter Rousseeuw [ctb] (Qn and Sn), Christophe Croux [ctb] (Qn and Sn), Valentin Todorov [aut] (most robust Cov), Andreas Ruckstuhl [aut] (nlrob, anova, glmrob), Matias Salibian-Barrera [aut] (lmrob orig.), Tobias Verbeke [ctb, fnd] (mc, adjbox), Manuel Koller [aut] (mc, lmrob, psi-func.), Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob), Maria Anna di Palma [ctb] (initial version of Comedian)",
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      "Repository": "CRAN"
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      "Type": "Package",
      "Title": "General Purpose Optimization in R using C++",
      "Authors@R": "person(given = \"Yi\", family = \"Pan\", role = c(\"aut\", \"cre\"), email = \"ypan1988@gmail.com\")",
      "Description": "Perform general purpose optimization in R using C++. A unified  wrapper interface is provided to call C functions of the five optimization  algorithms ('Nelder-Mead', 'BFGS', 'CG', 'L-BFGS-B' and 'SANN') underlying  optim().",
      "License": "GPL (>= 2)",
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      "VignetteBuilder": "R.rsp",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Yi Pan [aut, cre]",
      "Maintainer": "Yi Pan <ypan1988@gmail.com>",
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      "Description": "Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.",
      "License": "MIT + file LICENSE",
      "URL": "https://roxygen2.r-lib.org/, https://github.com/r-lib/roxygen2",
      "BugReports": "https://github.com/r-lib/roxygen2/issues",
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        "cli (>= 3.3.0)",
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        "R6 (>= 2.1.2)",
        "rlang (>= 1.0.6)",
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        "withr",
        "xml2"
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      "Suggests": [
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        "R.methodsS3",
        "R.oo",
        "rmarkdown (>= 2.16)",
        "testthat (>= 3.1.2)",
        "yaml"
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      "VignetteBuilder": "knitr",
      "Config/Needs/development": "testthat",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
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      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
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      "Source": "Repository",
      "Priority": "recommended",
      "Date": "2023-12-04",
      "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))",
      "Description": "Recursive partitioning for classification,  regression and survival trees.  An implementation of most of the  functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.",
      "Title": "Recursive Partitioning and Regression Trees",
      "Depends": [
        "R (>= 2.15.0)",
        "graphics",
        "stats",
        "grDevices"
      ],
      "Suggests": [
        "survival"
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      "License": "GPL-2 | GPL-3",
      "LazyData": "yes",
      "ByteCompile": "yes",
      "NeedsCompilation": "yes",
      "Author": "Terry Therneau [aut], Beth Atkinson [aut, cre], Brian Ripley [trl] (producer of the initial R port, maintainer 1999-2017)",
      "Maintainer": "Beth Atkinson <atkinson@mayo.edu>",
      "Repository": "CRAN",
      "URL": "https://github.com/bethatkinson/rpart, https://cran.r-project.org/package=rpart",
      "BugReports": "https://github.com/bethatkinson/rpart/issues"
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      "Version": "2.1.1",
      "Source": "Repository",
      "Title": "Finding Files in Project Subdirectories",
      "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))",
      "Description": "Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.",
      "License": "MIT + file LICENSE",
      "URL": "https://rprojroot.r-lib.org/, https://github.com/r-lib/rprojroot",
      "BugReports": "https://github.com/r-lib/rprojroot/issues",
      "Depends": [
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        "knitr",
        "lifecycle",
        "rlang",
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      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2.9000",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "true",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>)",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
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      "Version": "0.3.3",
      "Source": "Repository",
      "Title": "Run Once and Save Result",
      "Authors@R": "person(\"Florian\", \"Priv<U+00E9>\", role = c(\"aut\", \"cre\"), email = \"florian.prive.21@gmail.com\")",
      "Description": "Package 'runonce' helps automating the saving of long-running code to help running the same code multiple times. If you run some long-running  code once, it saves the result in a file on disk. Then, if the result  already exists, i.e. if the code has already been run and its output has  already been saved, it just reads the result from the stored file instead  of running the code again.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
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      "Imports": [
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      "Suggests": [
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        "covr"
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      "URL": "https://github.com/privefl/runonce, https://privefl.github.io/runonce/",
      "BugReports": "https://github.com/privefl/runonce/issues",
      "NeedsCompilation": "no",
      "Author": "Florian Priv<U+00E9> [aut, cre]",
      "Maintainer": "Florian Priv<U+00E9> <florian.prive.21@gmail.com>",
      "Repository": "CRAN"
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      "Version": "0.4.10",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Syntactically Awesome Style Sheets ('Sass')",
      "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this, R developers can use variables, inheritance, and functions to generate dynamic style sheets. The package uses the 'Sass CSS' extension language, which is stable, powerful, and CSS compatible.",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@rstudio.com\", \"aut\"), person(\"Timothy\", \"Mastny\", , \"tim.mastny@gmail.com\", \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Barret\", \"Schloerke\", , \"barret@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Carson\", \"Sievert\", , \"carson@rstudio.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(family = \"RStudio\", role = c(\"cph\", \"fnd\")), person(family = \"Sass Open Source Foundation\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Greter\", \"Marcel\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Mifsud\", \"Michael\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Hampton\", \"Catlin\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Natalie\", \"Weizenbaum\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Chris\", \"Eppstein\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Adams\", \"Joseph\", role = c(\"ctb\", \"cph\"), comment = \"json.cpp\"), person(\"Trifunovic\", \"Nemanja\", role = c(\"ctb\", \"cph\"), comment = \"utf8.h\") )",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass",
      "BugReports": "https://github.com/rstudio/sass/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "GNU make",
      "Imports": [
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        "rlang (>= 0.4.10)",
        "htmltools (>= 0.5.1)",
        "R6",
        "rappdirs"
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      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown",
        "withr",
        "shiny",
        "curl"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "scales": {
      "Package": "scales",
      "Version": "1.4.0",
      "Source": "Repository",
      "Title": "Scale Functions for Visualization",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
      "License": "MIT + file LICENSE",
      "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
      "BugReports": "https://github.com/r-lib/scales/issues",
      "Depends": [
        "R (>= 4.1)"
      ],
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        "farver (>= 2.0.3)",
        "glue",
        "labeling",
        "lifecycle",
        "R6",
        "RColorBrewer",
        "rlang (>= 1.1.0)",
        "viridisLite"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "dichromat",
        "ggplot2",
        "hms (>= 0.5.0)",
        "stringi",
        "testthat (>= 3.0.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2025-04-23",
      "Encoding": "UTF-8",
      "LazyLoad": "yes",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
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      "Package": "sessioninfo",
      "Version": "1.2.3",
      "Source": "Repository",
      "Title": "R Session Information",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Robert\", \"Flight\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"R Core team\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Query and print information about the current R session.  It is similar to 'utils::sessionInfo()', but includes more information about packages, and where they were installed from.",
      "License": "GPL-2",
      "URL": "https://github.com/r-lib/sessioninfo#readme, https://sessioninfo.r-lib.org",
      "BugReports": "https://github.com/r-lib/sessioninfo/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "cli (>= 3.1.0)",
        "tools",
        "utils"
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        "callr",
        "covr",
        "gh",
        "reticulate",
        "rmarkdown",
        "testthat (>= 3.2.0)",
        "withr"
      ],
      "Config/Needs/website": "pkgdown, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [cre], Hadley Wickham [aut], Winston Chang [aut], Robert Flight [aut], Kirill Müller [aut], Jim Hester [aut], R Core team [ctb], Posit Software, PBC [cph, fnd]",
      "Repository": "CRAN"
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      "Version": "1.56.0",
      "Source": "Bioconductor",
      "Title": "SnpMatrix and XSnpMatrix classes and methods",
      "Date": "2022-07-27",
      "Author": "David Clayton <dc208@cam.ac.uk>",
      "Description": "Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.",
      "Maintainer": "David Clayton <dc208@cam.ac.uk>",
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        "R(>= 2.10.0)",
        "survival",
        "Matrix",
        "methods"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "stats",
        "utils",
        "BiocGenerics",
        "zlibbioc"
      ],
      "Suggests": [
        "hexbin"
      ],
      "License": "GPL-3",
      "Collate": "ss.R contingency.table.R convert.R compare.R glm-test.R imputation.R indata.R long.R misc.R ld.R mvtests.R pedfile.R outdata.R plink.R qc.R qq-chisq.R single.R tdt-single.R structure.R xstuff.R",
      "LazyLoad": "yes",
      "biocViews": "Microarray, SNP, GeneticVariability",
      "git_url": "https://git.bioconductor.org/packages/snpStats",
      "git_branch": "RELEASE_3_20",
      "git_last_commit": "92d244d",
      "git_last_commit_date": "2024-10-29",
      "Repository": "Bioconductor 3.20",
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      "Version": "7.3-17",
      "Source": "Repository",
      "Priority": "recommended",
      "Date": "2023-07-20",
      "Depends": [
        "R (>= 3.0.0)",
        "graphics",
        "stats",
        "utils"
      ],
      "Suggests": [
        "MASS"
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      "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"ripley@stats.ox.ac.uk\"), person(\"Roger\", \"Bivand\", role = \"ctb\"), person(\"William\", \"Venables\", role = \"cph\"))",
      "Description": "Functions for kriging and point pattern analysis.",
      "Title": "Functions for Kriging and Point Pattern Analysis",
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "NeedsCompilation": "yes",
      "Author": "Brian Ripley [aut, cre, cph], Roger Bivand [ctb], William Venables [cph]",
      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
      "Repository": "CRAN"
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      "Version": "1.8.7",
      "Source": "Repository",
      "Date": "2025-03-27",
      "Title": "Fast and Portable Character String Processing Facilities",
      "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).",
      "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/",
      "BugReports": "https://github.com/gagolews/stringi/issues",
      "SystemRequirements": "ICU4C (>= 61, optional)",
      "Type": "Package",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "tools",
        "utils",
        "stats"
      ],
      "Biarch": "TRUE",
      "License": "file LICENSE",
      "Authors@R": "c(person(given = \"Marek\", family = \"Gagolewski\", role = c(\"aut\", \"cre\", \"cph\"), email = \"marek@gagolewski.com\", comment = c(ORCID = \"0000-0003-0637-6028\")), person(given = \"Bartek\", family = \"Tartanus\", role = \"ctb\"), person(\"Unicode, Inc. and others\", role=\"ctb\", comment = \"ICU4C source code, Unicode Character Database\") )",
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      "Author": "Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>), Bartek Tartanus [ctb], Unicode, Inc. and others [ctb] (ICU4C source code, Unicode Character Database)",
      "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
      "License_is_FOSS": "yes",
      "Repository": "CRAN"
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      "Version": "1.6.0",
      "Source": "Repository",
      "Title": "Simple, Consistent Wrappers for Common String Operations",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.",
      "License": "MIT + file LICENSE",
      "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr",
      "BugReports": "https://github.com/tidyverse/stringr/issues",
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        "dplyr",
        "gt",
        "htmltools",
        "htmlwidgets",
        "knitr",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "tibble"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/potools/style": "explicit",
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      "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Title": "Survival Analysis",
      "Priority": "recommended",
      "Date": "2024-06-01",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "graphics",
        "Matrix",
        "methods",
        "splines",
        "stats",
        "utils"
      ],
      "LazyData": "Yes",
      "LazyDataCompression": "xz",
      "ByteCompile": "Yes",
      "Authors@R": "c(person(c(\"Terry\", \"M\"), \"Therneau\", email=\"therneau.terry@mayo.edu\", role=c(\"aut\", \"cre\")), person(\"Thomas\", \"Lumley\", role=c(\"ctb\", \"trl\"), comment=\"original S->R port and R maintainer until 2009\"), person(\"Atkinson\", \"Elizabeth\", role=\"ctb\"), person(\"Crowson\", \"Cynthia\", role=\"ctb\"))",
      "Description": "Contains the core survival analysis routines, including definition of Surv objects,  Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.",
      "License": "LGPL (>= 2)",
      "URL": "https://github.com/therneau/survival",
      "NeedsCompilation": "yes",
      "Author": "Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]",
      "Maintainer": "Terry M Therneau <therneau.terry@mayo.edu>",
      "Repository": "CRAN"
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      "Package": "susieR",
      "Version": "0.14.2",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Title": "Sum of Single Effects Linear Regression",
      "Description": "Implements methods for variable selection in linear regression based on the \"Sum of Single Effects\" (SuSiE) model, as described in Wang et al (2020) <DOI:10.1101/501114> and Zou et al (2021) <DOI:10.1101/2021.11.03.467167>. These methods provide simple summaries, called \"Credible Sets\", for accurately quantifying uncertainty in which variables should be selected. The methods are motivated by genetic fine-mapping applications, and are particularly well-suited to settings where variables are highly correlated and detectable effects are sparse. The fitting algorithm, a Bayesian analogue of stepwise selection methods called \"Iterative Bayesian Stepwise Selection\" (IBSS), is simple and fast, allowing the SuSiE model be fit to large data sets (thousands of samples and hundreds of thousands of variables).",
      "Date": "2025-06-04",
      "Authors@R": "c(person(\"Gao\",\"Wang\",role=\"aut\",email=\"wang.gao@columbia.edu\"), person(\"Yuxin\",\"Zou\",role=\"aut\"), person(\"Kaiqian\",\"Zhang\",role=\"aut\"), person(\"Peter\",\"Carbonetto\",role=c(\"aut\",\"cre\"), email=\"peter.carbonetto@gmail.com\"), person(\"Matthew\",\"Stephens\",role=\"aut\"))",
      "URL": "https://github.com/stephenslab/susieR",
      "BugReports": "https://github.com/stephenslab/susieR/issues",
      "License": "BSD_3_clause + file LICENSE",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "methods",
        "graphics",
        "grDevices",
        "stats",
        "Matrix",
        "matrixStats",
        "mixsqp",
        "reshape",
        "crayon",
        "ggplot2"
      ],
      "Suggests": [
        "curl",
        "testthat",
        "microbenchmark",
        "knitr",
        "rmarkdown",
        "Rfast",
        "cowplot"
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      "LazyData": "yes",
      "LazyDataCompression": "xz",
      "NeedsCompilation": "no",
      "RoxygenNote": "7.2.3",
      "VignetteBuilder": "knitr",
      "Author": "Gao Wang [aut], Yuxin Zou [aut], Kaiqian Zhang [aut], Peter Carbonetto [aut, cre], Matthew Stephens [aut]",
      "Maintainer": "Peter Carbonetto <peter.carbonetto@gmail.com>",
      "Repository": "CRAN"
    },
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      "Version": "3.3.2",
      "Source": "Repository",
      "Title": "Unit Testing for R",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Implementation of utils::recover()\") )",
      "Description": "Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.",
      "License": "MIT + file LICENSE",
      "URL": "https://testthat.r-lib.org, https://github.com/r-lib/testthat",
      "BugReports": "https://github.com/r-lib/testthat/issues",
      "Depends": [
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        "cli (>= 3.6.5)",
        "desc (>= 1.4.3)",
        "evaluate (>= 1.0.4)",
        "jsonlite (>= 2.0.0)",
        "lifecycle (>= 1.0.4)",
        "magrittr (>= 2.0.3)",
        "methods",
        "pkgload (>= 1.4.0)",
        "praise (>= 1.0.0)",
        "processx (>= 3.8.6)",
        "ps (>= 1.9.1)",
        "R6 (>= 2.6.1)",
        "rlang (>= 1.1.6)",
        "utils",
        "waldo (>= 0.6.2)",
        "withr (>= 3.0.2)"
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      "Suggests": [
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        "curl (>= 0.9.5)",
        "diffviewer (>= 0.1.0)",
        "digest (>= 0.6.33)",
        "gh",
        "knitr",
        "otel",
        "otelsdk",
        "rmarkdown",
        "rstudioapi",
        "S7",
        "shiny",
        "usethis",
        "vctrs (>= 0.1.0)",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "watcher, parallel*",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Implementation of utils::recover())",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "tibble": {
      "Package": "tibble",
      "Version": "3.3.1",
      "Source": "Repository",
      "Title": "Simple Data Frames",
      "Authors@R": "c( person(\"Kirill\", \"M<U+00FC>ller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Romain\", \"Francois\", , \"romain@r-enthusiasts.com\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.",
      "License": "MIT + file LICENSE",
      "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble",
      "BugReports": "https://github.com/tidyverse/tibble/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
        "cli",
        "lifecycle (>= 1.0.0)",
        "magrittr",
        "methods",
        "pillar (>= 1.8.1)",
        "pkgconfig",
        "rlang (>= 1.0.2)",
        "utils",
        "vctrs (>= 0.5.0)"
      ],
      "Suggests": [
        "bench",
        "bit64",
        "blob",
        "brio",
        "callr",
        "DiagrammeR",
        "dplyr",
        "evaluate",
        "formattable",
        "ggplot2",
        "here",
        "hms",
        "htmltools",
        "knitr",
        "lubridate",
        "nycflights13",
        "pkgload",
        "purrr",
        "rmarkdown",
        "stringi",
        "testthat (>= 3.0.2)",
        "tidyr",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/autostyle/rmd": "false",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "true",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants",
      "Config/usethis/last-upkeep": "2025-06-07",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3.9000",
      "NeedsCompilation": "yes",
      "Author": "Kirill M<U+00FC>ller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
      "Maintainer": "Kirill M<U+00FC>ller <kirill@cynkra.com>",
      "Repository": "CRAN"
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    "tinytex": {
      "Package": "tinytex",
      "Version": "0.59",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )",
      "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.",
      "Imports": [
        "xfun (>= 0.48)"
      ],
      "Suggests": [
        "testit",
        "rstudioapi"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/tinytex",
      "BugReports": "https://github.com/rstudio/tinytex/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.3",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: <https://orcid.org/0000-0003-4474-2498>), Devon Ryan [ctb] (ORCID: <https://orcid.org/0000-0002-8549-0971>), Ethan Heinzen [ctb], Fernando Cagua [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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    "triebeard": {
      "Package": "triebeard",
      "Version": "0.4.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Radix' Trees in 'Rcpp'",
      "Author": "Os Keyes [aut, cre], Drew Schmidt [aut], Yuuki Takano [cph]",
      "Maintainer": "Os Keyes <ironholds@gmail.com>",
      "Description": "'Radix trees', or 'tries', are key-value data structures optimised for efficient lookups, similar in purpose to hash tables. 'triebeard' provides an implementation of 'radix trees' for use in R programming and in developing packages with 'Rcpp'.",
      "License": "MIT + file LICENSE",
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "Imports": [
        "Rcpp"
      ],
      "RoxygenNote": "7.1.2",
      "Suggests": [
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        "rmarkdown",
        "testthat"
      ],
      "VignetteBuilder": "knitr",
      "URL": "https://github.com/Ironholds/triebeard/",
      "BugReports": "https://github.com/Ironholds/triebeard/issues",
      "Date": "2023-03-04",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "urltools": {
      "Package": "urltools",
      "Version": "1.7.3.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Vectorised Tools for URL Handling and Parsing",
      "Date": "2019-04-14",
      "Authors@R": "c(person(given = \"Os\", family = \"Keyes\", role = c(\"aut\", \"cre\"), email = \"ironholds@gmail.com\"), person(given = \"Jay\", family = \"Jacobs\", role = \"aut\"), person(given = \"Drew\", family = \"Schmidt\", role = \"aut\"), person(given = \"Mark\", family = \"Greenaway\", role = \"ctb\"), person(given = \"Bob\", family = \"Rudis\", role = \"ctb\"), person(given = \"Alex\", family = \"Pinto\", role = \"ctb\"), person(given = \"Maryam\", family = \"Khezrzadeh\", role = \"ctb\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = c(\"Adam\", \"M.\"), family = \"Costello\", role = \"cph\"), person(given = \"Jeff\", family = \"Bezanson\", role = \"cph\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = \"Xueyuan\", family = \"Jiang\", role = \"ctb\"))",
      "Description": "A toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.",
      "License": "MIT + file LICENSE",
      "LazyData": "TRUE",
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp",
        "methods",
        "triebeard"
      ],
      "Suggests": [
        "testthat",
        "knitr"
      ],
      "URL": "https://github.com/Ironholds/urltools/",
      "BugReports": "https://github.com/Ironholds/urltools/issues",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.10)"
      ],
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Author": "Os Keyes [aut, cre], Jay Jacobs [aut], Drew Schmidt [aut], Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb], Adam M. Costello [cph], Jeff Bezanson [cph], Peter Meilstrup [ctb], Xueyuan Jiang [ctb]",
      "Maintainer": "Os Keyes <ironholds@gmail.com>"
    },
    "utf8": {
      "Package": "utf8",
      "Version": "1.2.6",
      "Source": "Repository",
      "Title": "Unicode Text Processing",
      "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))",
      "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.",
      "License": "Apache License (== 2.0) | file LICENSE",
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      "Date": "2024-01-28",
      "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Ant<U+00F4>nio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"C<U+00E9>dric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This package also contains  'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the  'ggplot2' bindings can be found at  <https://cran.r-project.org/package=viridisLite>.",
      "License": "MIT + file LICENSE",
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      "Date": "2026-02-03",
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      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This is the 'lite' version of the  'viridis' package that also contains 'ggplot2' bindings for discrete and  continuous color and fill scales and can be found at  <https://cran.r-project.org/package=viridis>.",
      "License": "MIT + file LICENSE",
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      "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Ant<U+00F4>nio Pedro Camargo [ctb, cph], C<U+00E9>dric Scherer [ctb, cph]",
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      "Description": "Compare complex R objects and reveal the key differences. Designed particularly for use in testing packages where being able to quickly isolate key differences makes understanding test failures much easier.",
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      "Description": "Cross platform solution to open files, directories or 'URLs' with their associated programs.",
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      "URL": "https://github.com/r-lib/xopen#readme, https://r-lib.github.io/xopen/",
      "BugReports": "https://github.com/r-lib/xopen/issues",
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      "Author": "Hadley Wickham [cre] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Shawn Garbett [ctb] (ORCID: <https://orcid.org/0000-0003-4079-5621>), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Zhuoer Dong [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: <https://orcid.org/0000-0002-5613-5006>), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]",
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}