@@ -11,7 +11,7 @@ ECOLI,Escherichia coli,str. K-12 substr. MG1655,59,ensembl_bacteria,https://ftp.
1111HUMAN , Homo sapiens ,, 112 , ensembl , https://ftp.ensembl.org/pub/release-112/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz , https://ftp.ensembl.org/pub/release-112/gtf/homo_sapiens/Homo_sapiens.GRCh38.112.gtf.gz , 9606 , org.Hs.eg.db ,, https://figshare.com/ndownloader/files/48354445 , https://figshare.com/ndownloader/files/48354448
1212, Lactobacillus acidophilus , NCFM ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/985/GCF_000011985.1_ASM1198v1/GCF_000011985.1_ASM1198v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/985/GCF_000011985.1_ASM1198v1/GCF_000011985.1_ASM1198v1_genomic.gtf.gz , 272621 ,,, https://figshare.com/ndownloader/files/49061254 , https://figshare.com/ndownloader/files/49061257
1313MOUSE , Mus musculus ,, 112 , ensembl , https://ftp.ensembl.org/pub/release-112/fasta/mus_musculus/dna/Mus_musculus.GRCm39.dna.primary_assembly.fa.gz , https://ftp.ensembl.org/pub/release-112/gtf/mus_musculus/Mus_musculus.GRCm39.112.gtf.gz , 10090 , org.Mm.eg.db ,, https://figshare.com/ndownloader/files/48354460 , https://figshare.com/ndownloader/files/48354457
14- , Mycobacterium marinum , M ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/345/GCF_000018345.1_ASM1834v1/GCF_000018345.1_ASM1834v1_genomic.gtf .gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/345/GCF_000018345.1_ASM1834v1/GCF_000018345.1_ASM1834v1_genomic.gtf.gz , 216594 ,,, https://figshare.com/ndownloader/files/49061260 , https://figshare.com/ndownloader/files/49061263
14+ , Mycobacterium marinum , M ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/345/GCF_000018345.1_ASM1834v1/GCF_000018345.1_ASM1834v1_genomic.fna .gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/018/345/GCF_000018345.1_ASM1834v1/GCF_000018345.1_ASM1834v1_genomic.gtf.gz , 216594 ,,, https://figshare.com/ndownloader/files/49061260 , https://figshare.com/ndownloader/files/49061263
1515ORYSJ , Oryza sativa , Japonica , 59 , ensembl_plants , https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-59/fasta/oryza_sativa/dna/Oryza_sativa.IRGSP-1.0.dna.toplevel.fa.gz , https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-59/gtf/oryza_sativa/Oryza_sativa.IRGSP-1.0.59.gtf.gz , 39947 ,,, https://figshare.com/ndownloader/files/48354451 , https://figshare.com/ndownloader/files/48354454
1616ORYLA , Oryzias latipes ,, 112 , ensembl , http://ftp.ensembl.org/pub/release-112/fasta/oryzias_latipes/dna/Oryzias_latipes.ASM223467v1.dna.toplevel.fa.gz , http://ftp.ensembl.org/pub/release-112/gtf/oryzias_latipes/Oryzias_latipes.ASM223467v1.112.gtf.gz , 8090 ,, org.Olatipes.eg.db , https://figshare.com/ndownloader/files/48354463 , https://figshare.com/ndownloader/files/48354466
1717, Pseudomonas aeruginosa , UCBPP-PA14 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/014/625/GCF_000014625.1_ASM1462v1/GCF_000014625.1_ASM1462v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/014/625/GCF_000014625.1_ASM1462v1/GCF_000014625.1_ASM1462v1_genomic.gtf.gz , 208963 ,,, https://figshare.com/ndownloader/files/49061266 , https://figshare.com/ndownloader/files/49061269
@@ -21,4 +21,5 @@ SALTY,Salmonella enterica,serovar Typhimurium str. LT2,,ncbi,https://ftp.ncbi.nl
2121, Serratia liquefaciens , ATCC 27592 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/085/GCF_000422085.1_ASM42208v1/GCF_000422085.1_ASM42208v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/422/085/GCF_000422085.1_ASM42208v1/GCF_000422085.1_ASM42208v1_genomic.gtf.gz , 1346614 ,,, https://figshare.com/ndownloader/files/49061278 , https://figshare.com/ndownloader/files/49061281
2222, Staphylococcus aureus , MRSA252 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/505/GCF_000011505.1_ASM1150v1/GCF_000011505.1_ASM1150v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/505/GCF_000011505.1_ASM1150v1/GCF_000011505.1_ASM1150v1_genomic.gtf.gz , 282458 ,,, https://figshare.com/ndownloader/files/49061284 , https://figshare.com/ndownloader/files/49061287
2323, Streptococcus mutans , UA159 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2/GCF_000007465.2_ASM746v2_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2/GCF_000007465.2_ASM746v2_genomic.gtf.gz , 210007 ,,, https://figshare.com/ndownloader/files/49061290 , https://figshare.com/ndownloader/files/49061293
24- , Vibrio fischeri , ES114 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/805/GCF_000011805.1_ASM1180v1/GCF_000011805.1_ASM1180v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/805/GCF_000011805.1_ASM1180v1/GCF_000011805.1_ASM1180v1_genomic.gtf.gz , 312309 ,,, https://figshare.com/ndownloader/files/49061296 , https://figshare.com/ndownloader/files/49061299
24+
25+ , Vibrio fischeri , ES114 ,, ncbi , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/805/GCF_000011805.1_ASM1180v1/GCF_000011805.1_ASM1180v1_genomic.fna.gz , https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/805/GCF_000011805.1_ASM1180v1/GCF_000011805.1_ASM1180v1_genomic.gtf.gz , 312309 ,,, https://figshare.com/ndownloader/files/49061296 , https://figshare.com/ndownloader/files/49061299
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