Skip to content

Reference Dataset for Testing and Training on Anatomical Variations #74

Description

@yw7

We should consider using the dataset referenced in the following paper for testing and training to better account for anatomical variations in CT images:

https://doi.org/10.1038/s41597-021-01060-0

OSF Reporsitories:
VerSe'19: https://osf.io/nqjyw/
VerSe'20: https://osf.io/t98fz/

Some examples using this dataset on #75:

11 Thoracic Vertebrae ✅ 4 Lumbar Vertebrae✅ 6 Lumbar Vertebrae❌ 6 Lumbar Vertebrae✅
sub-verse636_ct_11t_sag_0 5_step2_output_tags sub-verse627_ct_4l_sag_0 5_step2_output_tags sub-verse623_ct_6l_sag_0 5_step2_output_tags sub-verse585_ct_6l_sag_0 5_step2_output_tags

Note: The current main branch is also support 4 and 6 lumbar vertebrae when full field of view is provided:

4 Lumbar Vertebrae✅ 6 Lumbar Vertebrae✅
whole_amuPAM50016_T1w_sag_0 5_step2_output_tags sub-verse585_ct_6l_sag_0 5_step2_output_tags (1)

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions