CI #4668
nextstrain-botci.yaml
on: schedule
Matrix: pytest-cram
mypy
52s
pyright
21s
check-docs
41s
check-subsample-config-schema
44s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
15s
rebuild-docker-image
0s
Annotations
20 warnings
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (nipah)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (WNV)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (norovirus)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (rubella)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pytest-cram (python=3.12 biopython==1.82 numpy==1.26.0)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-e92b363-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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pytest-cram (python=3.14 biopython==1.86 numpy==2.3.2)
Failed to save: Unable to reserve cache with key 2026-08-26-linux-64-augur-args-f1d7981-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
|
221 KB |
sha256:42cebc30ff32471099fa77e0e98e821f51b66d768b2a989b0ca9b0d6bebe39b4
|
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output-WNV
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977 KB |
sha256:8b74833e674e8368f2fbee87ccffb4b19b43ab8e53c0069a61e17c600ce50032
|
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output-avian-flu
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113 KB |
sha256:68752fb1f4bf9d38f731f137917060b943267f0c1259612778f046fe1a5b97af
|
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output-dengue
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435 KB |
sha256:1f7f2d8767f499687543ec8ea757529494d8e3a5629a7b3469daed2d05d88f29
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output-lassa
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369 KB |
sha256:ecd4d560e40467b3337f7ec7d6ab74c46341fac564784702c4e9679d3ec9c10c
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output-measles
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12.3 MB |
sha256:156b93e9920b26474a260be7421d64bee03597cb33b8bcac68e85cde50d8bbfa
|
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output-mpox
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22.4 MB |
sha256:b747ba650160a1ec88cc6013700991db4983cdbcc967f24ed61d3b5c0bf25305
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output-mumps
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379 KB |
sha256:e739a5d2fcc24aaaab85f42f72ac73d4d6cdbe357ef7425369cde15c3b0fa4b7
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output-ncov
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876 KB |
sha256:137787bd6c099dc29528484cf119a181eb45898574bc36072a1c674d324c9c22
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output-nipah
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1.29 MB |
sha256:089cb9e12f737a3764f3e39e0c01dbd7e88ea8fbc97d9971a8a10f8a7d25368e
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output-norovirus
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3.16 MB |
sha256:b97248ae315420b08f1e067bc839ce26b066d78dce58203e903571177bb011ed
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output-oropouche
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639 KB |
sha256:106f501e952b3aa41beb64b04ef8d273600c756aa5a3153d93d8815d2ba86fc4
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output-rabies
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5.47 MB |
sha256:6b6d4801f28c6676ddfbc85d50d7ed20a7046148b9f5f6031f501558998b410b
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output-rsv
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665 KB |
sha256:753beb0416e9494765d47ea0fb209b31b443db6a03337ce46de36eb5cb76d1c0
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output-rubella
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1.67 MB |
sha256:a2eb03a1a91c9079c2b06d15e3cfdf00d4461a3cb4669ffe95f982bc403e879b
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output-seasonal-cov
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3.35 MB |
sha256:75974bd6a927c2f1d8d45b1c47107bb07682e4b43f1d2cf1ae0e229b01f8f41b
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output-seasonal-flu
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60.2 KB |
sha256:260b1fbe78576e6d79d08e4267e23946c61d9c8111dd76d14ede2588befae890
|
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output-vcf-input-tutorial
|
5.03 MB |
sha256:d8ee48eebf5ea966f5a8f070e8fa911c32109175f6580156b0565cc8807ab176
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output-yellow-fever
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1.43 MB |
sha256:7dc2f3600766312014eff5f5ca53e18c623fe6af931a5bd4b516ee7ee392e0c2
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output-zika
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860 KB |
sha256:8c1717aa5a1a38917bcbe2536578508e4c70abcf92c4f188c8dd18bc8e276f99
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