CI #4674
nextstrain-botci.yaml
on: schedule
Matrix: pytest-cram
mypy
50s
pyright
18s
check-docs
41s
check-subsample-config-schema
45s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
0s
Annotations
20 warnings
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (nipah)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (WNV)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (rubella)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-30d39f4-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3, another job may be creating this cache.
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pytest-cram (python=3.12 biopython numpy==1.*)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-e92b363-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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pytest-cram (python=3.14 biopython==1.86 numpy==2.3.2)
Failed to save: Unable to reserve cache with key 2026-08-29-linux-64-augur-args-f1d7981-root-dcc80ee-bin-366cd9cd8be14df1ab8ed50352a82111082a36686b2d389fdb79a92c3fafb3e3-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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222 KB |
sha256:eceae2aa2016c34edb39418f94c59e0a3e9950ee194e6e5b69c37a62c055b177
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output-WNV
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977 KB |
sha256:a719c4aa564f4f2a5df5201a57d4af180ca3db60a7bca4771e65139830d081a7
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output-avian-flu
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113 KB |
sha256:e76899369c9fda6deef39afee71cb81902651f9f5c647e47e5a7d0e2eed25aee
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output-dengue
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436 KB |
sha256:78842a1410130c7d67649cce227aaa626652ceea98e2cbee92632dd71885b1b1
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output-lassa
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369 KB |
sha256:3a7e88ccceafcd592e3e810e2d0c2a64bf0466f7b784d838aa78d4f9410c51d7
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output-measles
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12.3 MB |
sha256:1da6e285abdc0b2c11c22a34b3c28a719deb94660782f47642a21e1dda6e6254
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output-mpox
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22.4 MB |
sha256:786d2c84f5eb6741174c9f0e247f70c639506c3be7968aa710300e456eb300f6
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output-mumps
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379 KB |
sha256:1fade002325a6db70dbb02040a70232fbbf25e261781d1bb3c0f130ad4cf1a21
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output-ncov
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863 KB |
sha256:60cad5e42e46f6413c6306debb4dbbcb3b17ef34f35b2e1f26d149a34bbfbe56
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output-nipah
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1.27 MB |
sha256:45e88f1093adc7478196f29b8e60d98668e79eb1fc174b3381619a58ee95abeb
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output-norovirus
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3.16 MB |
sha256:ec09ab04e46c23e2d12540ff66edc87a6d7c54282a519d4e6f847d51142e4f05
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output-oropouche
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639 KB |
sha256:b2139b39ae79ef92a4f18a0756833cb77124490f1a63b6b1984dfefca62f9fb7
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output-rabies
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5.47 MB |
sha256:811396785d38129870fa8d0dee3329518993e3f39334f333445c9ed9e8ac55a1
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output-rsv
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665 KB |
sha256:ad391ff3e44d07e51ac8a6040dd9e789616cc81136bfb8429aa98636efd61bf6
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output-rubella
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1.67 MB |
sha256:3aa1315e1d1f9419169f705faf25570ed31b61e0a347cf58621749b11098cdeb
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output-seasonal-cov
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3.39 MB |
sha256:e200825ddfb507e24d8d3ce916e37641c32a50ca114099fd6c5bed374e942096
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output-seasonal-flu
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60.2 KB |
sha256:55729ddd16ceda7d57b7f91b2a37eb9fca09dcaaff1a6eaf6fd3dabbd28bfa52
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output-vcf-input-tutorial
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5.03 MB |
sha256:62e667781fab369344f3e85745ab2489f1db768672a5f44657edd5c79b095749
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output-yellow-fever
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1.44 MB |
sha256:c95148f2e4414d0b6f495176ca032d6022d2d41cb5aa131e66550ddb5ae27775
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output-zika
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861 KB |
sha256:d34bdc7db82e001c14a3ab57b85543ff4aef1fc7517c31c64ddac0787595e029
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