|
2 | 2 |
|
3 | 3 | ## Overview |
4 | 4 |
|
5 | | -### Purpose |
| 5 | +**Purpose:** Describe the steps and responsibilities required to onboard new users to the Hunt Cloud environment. |
6 | 6 |
|
7 | | -Describe the steps and responsibilities required to onboard new users to the Hunt Cloud environment. |
| 7 | +**Scope:** This guide covers initial introductions, account setup, cloud access, project organization. |
8 | 8 |
|
9 | | -### Scope |
10 | | - |
11 | | -This guide covers initial introductions, account setup, cloud access, project organization. |
12 | | - |
13 | | -### Audience |
14 | | - |
15 | | -Supervisors, lab leaders, lab coordinators, and new users. |
| 9 | +**Audience:** Supervisors, lab leaders, lab coordinators, and new users. |
16 | 10 |
|
17 | 11 | ### Responsibilities |
18 | 12 |
|
19 | 13 | - **Supervisor / Lab leader:** ensure the new user is introduced to this document, and assign a mentor _(if the supervisor is not capable of being the mentor)_. |
20 | 14 |
|
21 | | - > By default the mentor should be the supervisor. |
| 15 | + > By default the mentor should be the supervisor. |
22 | 16 |
|
23 | 17 | - **Lab leader:** approve the new user data access. |
24 | 18 |
|
@@ -52,9 +46,8 @@ Supervisors, lab leaders, lab coordinators, and new users. |
52 | 46 |
|
53 | 47 | 7. Explain how to use workbench. |
54 | 48 |
|
55 | | - > Clarify that the storage is differ on workbench from the main home lab. |
56 | | -
|
57 | | - > Clarify that is the main way to access the cloud. |
| 49 | + > Clarify that the storage is differ on workbench from the main home lab. <br> |
| 50 | + > Clarify that is the main way to access the cloud. |
58 | 51 |
|
59 | 52 | 8. Introduce other cloud access options (eg. ssh terminal, VS Code, MobaXterm). |
60 | 53 |
|
@@ -89,52 +82,52 @@ Supervisors, lab leaders, lab coordinators, and new users. |
89 | 82 | 2. Create a user folder |
90 | 83 | Path: `/mnt/work/users/username` |
91 | 84 |
|
92 | | - - This is your user personal folder. You can organize it as you wish. |
| 85 | + - This is your user personal folder. You can organize it as you wish. |
93 | 86 |
|
94 | 87 | 3. Project folder organization |
95 | 88 |
|
96 | | - - Maintain this organization and don't change it. |
| 89 | + - Maintain this organization and don't change it. |
97 | 90 |
|
98 | | - - Enforce good data practices. |
| 91 | + - Enforce good data practices. |
99 | 92 |
|
100 | | - - Learn the difference between Linux symbolic links vs copies. |
| 93 | + - Learn the difference between Linux symbolic links vs copies. |
101 | 94 |
|
102 | 95 | 4. Cloud privacy |
103 | 96 |
|
104 | | - - Know which data you can and can't access. |
| 97 | + - Know which data you can and can't access. |
105 | 98 |
|
106 | | - - Learn how to restrict others from accessing your folders _if deemed necessary_. |
| 99 | + - Learn how to restrict others from accessing your folders _if deemed necessary_. |
107 | 100 |
|
108 | 101 | 5. Compute nodes and user accounts |
109 | 102 |
|
110 | | - > **This should be guided and explained by the lab coordinator** |
| 103 | + > **This should be guided and explained by the lab coordinator** |
111 | 104 |
|
112 | | - - Use only if you will need to use GPUs or non-managed machines. |
| 105 | + - Use only if you will need to use GPUs or non-managed machines. |
113 | 106 |
|
114 | | - - Ask the lab coordinator to create you a user on the node. |
| 107 | + - Ask the lab coordinator to create you a user on the node. |
115 | 108 |
|
116 | | - > [NOTE] Your username at the node shall be the same of the home lab's. |
| 109 | + > [NOTE] Your username at the node shall be the same of the home lab's. |
117 | 110 |
|
118 | | - - Ask for explanation of the differences between GPU nodes and the home instance. |
| 111 | + - Ask for explanation of the differences between GPU nodes and the home instance. |
119 | 112 |
|
120 | | - - Ask for explanation of the data transfer between GPU nodes and home instance. |
| 113 | + - Ask for explanation of the data transfer between GPU nodes and home instance. |
121 | 114 |
|
122 | | - - If there is a need for it, ask the lab coordinator to grant you **sudo** access. |
| 115 | + - If there is a need for it, ask the lab coordinator to grant you **sudo** access. |
123 | 116 |
|
124 | | - > [NOTE] You will not be grant sudo access automatically. |
| 117 | + > [NOTE] You will not be granted sudo access automatically. |
125 | 118 |
|
126 | | - - Setup your requirements on the node: |
| 119 | + - Setup your requirements on the node: |
127 | 120 |
|
128 | | - - Install user-specific mamba. |
| 121 | + - Install user-specific mamba. |
129 | 122 |
|
130 | | - - Install any other software you may need (e.g. itk-snap, MATLAB,..etc) also user-specific. |
| 123 | + - Install any other software you may need (e.g. itk-snap, MATLAB,..etc) also user-specific. |
131 | 124 |
|
132 | | - - Ask the lab coordinator if is Docker already installed on the node machine. |
| 125 | + - Ask the lab coordinator if is Docker already installed on the node machine. |
133 | 126 |
|
134 | | - > [NOTE] Docker shall be installed system-wide and users shall be added to the docker group. |
| 127 | + > [NOTE] Docker shall be installed system-wide and users shall be added to the docker group. |
135 | 128 |
|
136 | 129 | 6. Data transfer policy |
137 | 130 |
|
138 | | - - You **MUST read** the Data Treatment section on this internal wiki. |
| 131 | + - You **MUST read** the Data Treatment section on this internal wiki. |
139 | 132 |
|
140 | | - - Never download data without **explicit written permission from Lab leader**, except for material allowed for publications. |
| 133 | + - Never download data without **explicit written permission from Lab leader**, except for material allowed for publications. |
0 commit comments