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minor formatting of on-boarding document
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docs/on-boarding.md

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## Overview
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### Purpose
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**Purpose:** Describe the steps and responsibilities required to onboard new users to the Hunt Cloud environment.
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Describe the steps and responsibilities required to onboard new users to the Hunt Cloud environment.
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**Scope:** This guide covers initial introductions, account setup, cloud access, project organization.
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### Scope
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This guide covers initial introductions, account setup, cloud access, project organization.
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### Audience
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Supervisors, lab leaders, lab coordinators, and new users.
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**Audience:** Supervisors, lab leaders, lab coordinators, and new users.
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### Responsibilities
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- **Supervisor / Lab leader:** ensure the new user is introduced to this document, and assign a mentor _(if the supervisor is not capable of being the mentor)_.
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> By default the mentor should be the supervisor.
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> By default the mentor should be the supervisor.
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- **Lab leader:** approve the new user data access.
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7. Explain how to use workbench.
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> Clarify that the storage is differ on workbench from the main home lab.
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> Clarify that is the main way to access the cloud.
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> Clarify that the storage is differ on workbench from the main home lab. <br>
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> Clarify that is the main way to access the cloud.
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8. Introduce other cloud access options (eg. ssh terminal, VS Code, MobaXterm).
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2. Create a user folder
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Path: `/mnt/work/users/username`
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- This is your user personal folder. You can organize it as you wish.
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- This is your user personal folder. You can organize it as you wish.
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3. Project folder organization
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- Maintain this organization and don't change it.
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- Maintain this organization and don't change it.
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- Enforce good data practices.
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- Enforce good data practices.
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- Learn the difference between Linux symbolic links vs copies.
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- Learn the difference between Linux symbolic links vs copies.
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4. Cloud privacy
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- Know which data you can and can't access.
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- Know which data you can and can't access.
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- Learn how to restrict others from accessing your folders _if deemed necessary_.
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- Learn how to restrict others from accessing your folders _if deemed necessary_.
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5. Compute nodes and user accounts
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> **This should be guided and explained by the lab coordinator**
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> **This should be guided and explained by the lab coordinator**
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- Use only if you will need to use GPUs or non-managed machines.
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- Use only if you will need to use GPUs or non-managed machines.
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- Ask the lab coordinator to create you a user on the node.
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- Ask the lab coordinator to create you a user on the node.
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> [NOTE] Your username at the node shall be the same of the home lab's.
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> [NOTE] Your username at the node shall be the same of the home lab's.
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- Ask for explanation of the differences between GPU nodes and the home instance.
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- Ask for explanation of the differences between GPU nodes and the home instance.
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- Ask for explanation of the data transfer between GPU nodes and home instance.
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- Ask for explanation of the data transfer between GPU nodes and home instance.
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- If there is a need for it, ask the lab coordinator to grant you **sudo** access.
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- If there is a need for it, ask the lab coordinator to grant you **sudo** access.
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> [NOTE] You will not be grant sudo access automatically.
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> [NOTE] You will not be granted sudo access automatically.
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- Setup your requirements on the node:
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- Setup your requirements on the node:
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- Install user-specific mamba.
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- Install user-specific mamba.
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- Install any other software you may need (e.g. itk-snap, MATLAB,..etc) also user-specific.
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- Install any other software you may need (e.g. itk-snap, MATLAB,..etc) also user-specific.
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- Ask the lab coordinator if is Docker already installed on the node machine.
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- Ask the lab coordinator if is Docker already installed on the node machine.
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> [NOTE] Docker shall be installed system-wide and users shall be added to the docker group.
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> [NOTE] Docker shall be installed system-wide and users shall be added to the docker group.
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6. Data transfer policy
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- You **MUST read** the Data Treatment section on this internal wiki.
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- You **MUST read** the Data Treatment section on this internal wiki.
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- Never download data without **explicit written permission from Lab leader**, except for material allowed for publications.
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- Never download data without **explicit written permission from Lab leader**, except for material allowed for publications.

mkdocs.yml

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scheme: slate
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toggle:
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icon: material/brightness-4
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name: Switch to system preference
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name: Switch to system preference
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nav:
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- Home: index.md
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- On-boarding: on-boarding.md
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- Off-boarding: off-boarding.md

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