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Replace temporary IDs by definitive IDs and reserialize.
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Lines changed: 27 additions & 27 deletions

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‎src/ontology/cl-edit.owl‎

Lines changed: 27 additions & 27 deletions
Original file line numberDiff line numberDiff line change
@@ -2334,6 +2334,8 @@ Declaration(Class(obo:CL_0020074))
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Declaration(Class(obo:CL_0020075))
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Declaration(Class(obo:CL_0020076))
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Declaration(Class(obo:CL_0020077))
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Declaration(Class(obo:CL_0020078))
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Declaration(Class(obo:CL_0020079))
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Declaration(Class(obo:CL_0700009))
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Declaration(Class(obo:CL_1000001))
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Declaration(Class(obo:CL_1000022))
@@ -3363,8 +3365,6 @@ Declaration(Class(obo:CL_7770003))
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Declaration(Class(obo:CL_7770004))
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Declaration(Class(obo:CL_7770005))
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Declaration(Class(obo:CL_7770006))
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Declaration(Class(obo:CL_9900000))
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Declaration(Class(obo:CL_9900001))
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Declaration(Class(obo:CP_0000000))
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Declaration(Class(obo:CP_0000025))
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Declaration(Class(obo:CP_0000027))
@@ -26513,6 +26513,31 @@ SubClassOf(obo:CL_0020077 ObjectSomeValuesFrom(obo:RO_0013003 obo:UBERON_0014548
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SubClassOf(obo:CL_0020077 ObjectSomeValuesFrom(obo:RO_0013003 obo:UBERON_0014552))
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SubClassOf(obo:CL_0020077 ObjectSomeValuesFrom(obo:RO_0013003 obo:UBERON_0014554))
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# Class: obo:CL_0020078 (crustin hemocyte)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") Annotation(oboInOwl:hasDbXref "doi:10.1016/j.aquaculture.2026.744306") obo:IAO_0000115 obo:CL_0020078 "A hemocyte, found in penaeid shrimp, that is characterized by high expression of crustin-family antimicrobial peptide transcripts. Crustin hemocytes function in antimicrobial peptide production and in arthropod-specific immune processes such as melanization and coagulation.")
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AnnotationAssertion(obo:IAO_0000233 obo:CL_0020078 "https://github.com/obophenotype/cell-ontology/issues/3690")
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AnnotationAssertion(terms:contributor obo:CL_0020078 <https://orcid.org/0009-0002-8634-7138>)
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AnnotationAssertion(terms:creator obo:CL_0020078 "Claude")
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AnnotationAssertion(terms:date obo:CL_0020078 "2026-09-08T14:53:13Z"^^xsd:dateTime)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_0020078 "crustin-positive hemocyte")
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AnnotationAssertion(rdfs:label obo:CL_0020078 "crustin hemocyte")
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SubClassOf(obo:CL_0020078 obo:CL_0000387)
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SubClassOf(obo:CL_0020078 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6683))
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# Class: obo:CL_0020079 (TGase hemocyte)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") Annotation(oboInOwl:hasDbXref "PMID:8093242") Annotation(oboInOwl:hasDbXref "doi:10.1016/j.aquaculture.2026.744306") obo:IAO_0000115 obo:CL_0020079 "A hemocyte, found in penaeid shrimp, that is characterized by high expression of hemocyte transglutaminase genes (TGase1, TGase). TGase hemocytes play a role in hemolymph coagulation, and likely represent an earlier, progenitor-like stage of hemocyte differentiation.")
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AnnotationAssertion(obo:IAO_0000233 obo:CL_0020079 "https://github.com/obophenotype/cell-ontology/issues/3690")
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AnnotationAssertion(terms:contributor obo:CL_0020079 <https://orcid.org/0009-0002-8634-7138>)
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AnnotationAssertion(terms:creator obo:CL_0020079 "Claude")
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AnnotationAssertion(terms:date obo:CL_0020079 "2026-09-08T14:53:13Z"^^xsd:dateTime)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_0020079 "TGase-positive hemocyte")
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_0020079 "transglutaminase-positive hemocyte")
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AnnotationAssertion(rdfs:label obo:CL_0020079 "TGase hemocyte")
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SubClassOf(obo:CL_0020079 obo:CL_0000387)
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SubClassOf(obo:CL_0020079 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6683))
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# Class: obo:CL_0700009 (obsolete kidney collecting duct beta-intercalated cell)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24051376") Annotation(oboInOwl:hasDbXref "PMID:31300091") Annotation(oboInOwl:hasDbXref "PMID:32016094") obo:IAO_0000115 obo:CL_0700009 "OBSOLETE. A renal beta-intercalated cell that is part of the cortical collecting duct. The medullary collecting duct does not contain the renal beta-intercalated cell type.")
@@ -36480,31 +36505,6 @@ SubClassOf(obo:CL_7770006 obo:CL_0002367)
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SubClassOf(obo:CL_7770006 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))
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SubClassOf(obo:CL_7770006 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q9UIK5))
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# Class: obo:CL_9900000 (crustin hemocyte)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") Annotation(oboInOwl:hasDbXref "doi:10.1016/j.aquaculture.2026.744306") obo:IAO_0000115 obo:CL_9900000 "A hemocyte, found in penaeid shrimp, that is characterized by high expression of crustin-family antimicrobial peptide transcripts. Crustin hemocytes function in antimicrobial peptide production and in arthropod-specific immune processes such as melanization and coagulation.")
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AnnotationAssertion(obo:IAO_0000233 obo:CL_9900000 "https://github.com/obophenotype/cell-ontology/issues/3690")
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AnnotationAssertion(terms:contributor obo:CL_9900000 <https://orcid.org/0009-0002-8634-7138>)
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AnnotationAssertion(terms:creator obo:CL_9900000 "Claude")
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AnnotationAssertion(terms:date obo:CL_9900000 "2026-09-08T14:53:13Z"^^xsd:dateTime)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_9900000 "crustin-positive hemocyte")
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AnnotationAssertion(rdfs:label obo:CL_9900000 "crustin hemocyte")
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SubClassOf(obo:CL_9900000 obo:CL_0000387)
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SubClassOf(obo:CL_9900000 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6683))
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# Class: obo:CL_9900001 (TGase hemocyte)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") Annotation(oboInOwl:hasDbXref "PMID:8093242") Annotation(oboInOwl:hasDbXref "doi:10.1016/j.aquaculture.2026.744306") obo:IAO_0000115 obo:CL_9900001 "A hemocyte, found in penaeid shrimp, that is characterized by high expression of hemocyte transglutaminase genes (TGase1, TGase). TGase hemocytes play a role in hemolymph coagulation, and likely represent an earlier, progenitor-like stage of hemocyte differentiation.")
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AnnotationAssertion(obo:IAO_0000233 obo:CL_9900001 "https://github.com/obophenotype/cell-ontology/issues/3690")
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AnnotationAssertion(terms:contributor obo:CL_9900001 <https://orcid.org/0009-0002-8634-7138>)
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AnnotationAssertion(terms:creator obo:CL_9900001 "Claude")
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AnnotationAssertion(terms:date obo:CL_9900001 "2026-09-08T14:53:13Z"^^xsd:dateTime)
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_9900001 "TGase-positive hemocyte")
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AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:40750028") oboInOwl:hasExactSynonym obo:CL_9900001 "transglutaminase-positive hemocyte")
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AnnotationAssertion(rdfs:label obo:CL_9900001 "TGase hemocyte")
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SubClassOf(obo:CL_9900001 obo:CL_0000387)
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SubClassOf(obo:CL_9900001 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6683))
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# Class: obo:CP_0000000 (obsolete CP:0000000)
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AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)

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