Adding SubClass of epithelial cell to mucous and serous secreting cell

[ct31-sanger]

Added SubClass of epithelial cell to serous secreting cell and mucous secreting cell. Evidence: PMID:39220634 and PMID:32507228 #3693

[ct31-sanger]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2026-09-09/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2026-09-09/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

goblet cell http://purl.obolibrary.org/obo/CL_0000160

Removed

• goblet cell SubClassOf secretory epithelial cell

large mucus secreting cholangiocyte http://purl.obolibrary.org/obo/CL_4047056

Removed

• large mucus secreting cholangiocyte SubClassOf secretory epithelial cell

mucous cell of stomach http://purl.obolibrary.org/obo/CL_0002180

Removed

• mucous cell of stomach SubClassOf secretory epithelial cell

mucus secreting cell http://purl.obolibrary.org/obo/CL_0000319

Added

• mucus secreting cell SubClassOf secretory epithelial cell

nasal serous secreting cell http://purl.obolibrary.org/obo/CL_4042016

Added

• nasal serous secreting cell SubClassOf glandular secretory epithelial cell

• nasal serous secreting cell SubClassOf epithelial cell of upper respiratory tract

• nasal serous secreting cell SubClassOf respiratory tract secretory epithelial cell

serous cell of epithelium of bronchus http://purl.obolibrary.org/obo/CL_1000331

Removed

• serous cell of epithelium of bronchus SubClassOf BFO_0000050 some UBERON_0002031

Added

• serous cell of epithelium of bronchus SubClassOf bronchial epithelial cell

• serous cell of epithelium of bronchus SubClassOf respiratory tract secretory epithelial cell

serous cell of epithelium of lobular bronchiole http://purl.obolibrary.org/obo/CL_1000333

Added

• serous cell of epithelium of lobular bronchiole SubClassOf epithelial cell of lung

• serous cell of epithelium of lobular bronchiole SubClassOf epithelial cell of tracheobronchial tree

• serous cell of epithelium of lobular bronchiole SubClassOf respiratory tract secretory epithelial cell

serous cell of epithelium of terminal bronchiole http://purl.obolibrary.org/obo/CL_1000332

Added

• serous cell of epithelium of terminal bronchiole SubClassOf epithelial cell of lung

• serous cell of epithelium of terminal bronchiole SubClassOf epithelial cell of tracheobronchial tree

• serous cell of epithelium of terminal bronchiole SubClassOf respiratory tract secretory epithelial cell

serous cell of epithelium of trachea http://purl.obolibrary.org/obo/CL_1000330

Added

• serous cell of epithelium of trachea SubClassOf tracheal epithelial cell

• serous cell of epithelium of trachea SubClassOf respiratory tract secretory epithelial cell

serous demilune cell of salivary gland http://purl.obolibrary.org/obo/CL_0020059

Removed

• serous demilune cell of salivary gland SubClassOf exocrine cell

• serous demilune cell of salivary gland SubClassOf BFO_0000050 some UBERON_0001044

Added

• serous demilune cell of salivary gland SubClassOf salivary gland glandular cell

serous secreting cell http://purl.obolibrary.org/obo/CL_0000313

Added

• serous secreting cell SubClassOf secretory epithelial cell

serous secreting cell of bronchus submucosal gland http://purl.obolibrary.org/obo/CL_4033005

Removed

• serous secreting cell of bronchus submucosal gland SubClassOf tracheobronchial serous cell

Added

• serous secreting cell of bronchus submucosal gland SubClassOf glandular secretory epithelial cell

• serous secreting cell of bronchus submucosal gland SubClassOf serous cell of epithelium of bronchus

tracheobronchial serous cell http://purl.obolibrary.org/obo/CL_0019001

Removed

• tracheobronchial serous cell SubClassOf eukaryotic cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

mucus secreting cell http://purl.obolibrary.org/obo/CL_0000319

Added

• mucus secreting cell SubClassOf epithelial cell

serous secreting cell http://purl.obolibrary.org/obo/CL_0000313

Added

• serous secreting cell SubClassOf epithelial cell

[dosumis]

Lots of inferred classifications added and removed by this. Need to check that all look good & trace explanations in Protege if not.

[dosumis]

Review changed inferences. Do they all look correct?

Even if they do, i might be a useful exercise to review some in Protege with explanations turned on to understand why they change. (Hint - some changes will remove redundancy - assertions inherited from parent classes).

[ct31-sanger]

I have reviewed and inferences look logical. Explanations have been viewed.