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  1. LactoPanGEM LactoPanGEM Public

    Pangenome reconstruction of Lactobacillaceae metabolism

    Python 6 1

  2. EcopanGEM EcopanGEM Public

    pangenome scale reconstruction of Escherichia coli metabolism (E. coli panGEM)

    Jupyter Notebook 3

  3. Media Media Public

    A curated, citation-backed library of growth & simulation media for genome-scale metabolic models — every component mapped to standard BiGG exchange reactions. Part of a GEM validation-data resourc…

    Python 5

  4. FluxStudio FluxStudio Public

    Constraint-based metabolic modelling in your browser. 13 analyses over 4,659 strain GEMs and 12,340 growth media, solved client-side with glpk.js (WASM). Validated against COBRApy.

    1

  5. GrowthDB GrowthDB Public

    Experimental prokaryote growth data for constraint-based metabolic modelling — growth rates, uptake & secretion rates with media (linked to the Media repo) and culture conditions, all referenced.

    Python 6

  6. panGEMs panGEMs Public

    Browser for E. coli (EcopanGEM) and Lactobacillaceae (LactoPanGEM) strain-specific genome-scale metabolic models