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Point the full run scripts at build/main (#129) #160

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Point the full run scripts at build/main (#129)

Point the full run scripts at build/main (#129) #160

Triggered via push July 28, 2026 11:26
@rcannoodrcannood
pushed 23c43b9
main
Status Cancelled
Total duration 2m 2s
Artifacts –

build.yaml

on: push
build  /  Build target branch
28s
build / Build target branch
Matrix: build / Build
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60 errors and 9 warnings
build / Build (cycombine_one_control_to_mid, methods, executable, docker, src/methods/cycombine_one_contr...
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build / Build (batchadjust_all_controls, methods, executable, docker, src/methods/batchadjust_all_control...
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build / Build (batchadjust_one_control, methods, executable, docker, src/methods/batchadjust_one_control/...
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build / Build (cytonorm_no_controls_to_mid, methods, executable, docker, src/methods/cytonorm_no_controls...
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build / Build (cytonorm_one_control_to_mid, methods, executable, docker, src/methods/cytonorm_one_control...
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build / Build (harmonypy, methods, executable, docker, src/methods/harmonypy/config.vsh.yaml, target/exec...
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build / Build (harmonypy, methods, executable, docker, src/methods/harmonypy/config.vsh.yaml, target/exec...
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build / Build (cycombine_all_controls_to_mid, methods, executable, docker, src/methods/cycombine_all_cont...
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build / Build (cycombine_all_controls_to_mid, methods, executable, docker, src/methods/cycombine_all_cont...
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build / Build (cytonorm_no_controls_to_goal, methods, executable, docker, src/methods/cytonorm_no_control...
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build / Build (cytonorm_no_controls_to_goal, methods, executable, docker, src/methods/cytonorm_no_control...
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build / Build (no_integration, control_methods, executable, docker, src/control_methods/no_integration/co...
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build / Build (no_integration, control_methods, executable, docker, src/control_methods/no_integration/co...
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build / Build (functional_marker_preservation, metrics, executable, docker, src/metrics/functional_marker...
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build / Build (shuffle_integration_within_batch, control_methods, executable, docker, src/control_methods...
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build / Build (shuffle_integration_within_batch, control_methods, executable, docker, src/control_methods...
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build / Build (cycombine_no_controls_to_mid, methods, executable, docker, src/methods/cycombine_no_contro...
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build / Build (cycombine_no_controls_to_mid, methods, executable, docker, src/methods/cycombine_no_contro...
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build / Build (cycombine_one_control_to_goal, methods, executable, docker, src/methods/cycombine_one_cont...
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build / Build (cycombine_one_control_to_goal, methods, executable, docker, src/methods/cycombine_one_cont...
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build / Build (ratio_consistent_peaks, metrics, executable, docker, src/metrics/ratio_consistent_peaks/co...
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build / Build (limma_remove_batch_effect, methods, executable, docker, src/methods/limma_remove_batch_eff...
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build / Build (rpca_to_goal, methods, executable, docker, src/methods/rpca_to_goal/config.vsh.yaml, targe...
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build / Build (perfect_integration, control_methods, executable, docker, src/control_methods/perfect_inte...
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build / Build (shuffle_integration_within_cell_type, control_methods, executable, docker, src/control_met...
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build / Build (emd, metrics, executable, docker, src/metrics/emd/config.vsh.yaml, target/executable/metri...
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build / Build (cytonorm_all_controls_to_goal, methods, executable, docker, src/methods/cytonorm_all_contr...
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build / Build (shuffle_integration_globally, control_methods, executable, docker, src/control_methods/shu...
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build / Build (rpca_to_mid, methods, executable, docker, src/methods/rpca_to_mid/config.vsh.yaml, target/...
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build / Build (shuffle_integration_globally, control_methods, executable, docker, src/control_methods/shu...
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build / Build (rpca_to_mid, methods, executable, docker, src/methods/rpca_to_mid/config.vsh.yaml, target/...
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build / Build (average_batch_r2, metrics, executable, docker, src/metrics/average_batch_r2/config.vsh.yam...
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build / Build (combat, methods, executable, docker, src/methods/combat/config.vsh.yaml, target/executable...
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build / Build (gaussnorm, methods, executable, docker, src/methods/gaussnorm/config.vsh.yaml, target/exec...
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build / Build (cytonorm_one_control_to_goal, methods, executable, docker, src/methods/cytonorm_one_contro...
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build / Build (flowsom_mapping_similarity, metrics, executable, docker, src/metrics/flowsom_mapping_simil...
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build / Build (process_dataset, data_processors, executable, docker, src/data_processors/process_dataset/...
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build / Build (cytonorm_all_controls_to_mid, methods, executable, docker, src/methods/cytonorm_all_contro...
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build / Build (cytonorm_all_controls_to_mid, methods, executable, docker, src/methods/cytonorm_all_contro...
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build / Build (lisi, metrics, executable, docker, src/metrics/lisi/config.vsh.yaml, target/executable/met...
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build / Build (lisi, metrics, executable, docker, src/metrics/lisi/config.vsh.yaml, target/executable/met...
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build / Build (cycombine_no_controls_to_goal, methods, executable, docker, src/methods/cycombine_no_contr...
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build / Build (cycombine_all_controls_to_goal, methods, executable, docker, src/methods/cycombine_all_con...
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build / Build (cycombine_all_controls_to_goal, methods, executable, docker, src/methods/cycombine_all_con...
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Build
Canceling since a higher priority waiting request for Build-refs/heads/main- exists
build / Build target branch
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, viash-io/viash-actions/ns-build@v6. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (no_integration, control_methods, executable, docker, src/control_methods/no_integration/co...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (ratio_consistent_peaks, metrics, executable, docker, src/metrics/ratio_consistent_peaks/co...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (shuffle_integration_within_cell_type, control_methods, executable, docker, src/control_met...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (combat, methods, executable, docker, src/methods/combat/config.vsh.yaml, target/executable...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (process_dataset, data_processors, executable, docker, src/data_processors/process_dataset/...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (cytonorm_all_controls_to_mid, methods, executable, docker, src/methods/cytonorm_all_contro...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (cycombine_no_controls_to_goal, methods, executable, docker, src/methods/cycombine_no_contr...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
build / Build (cycombine_all_controls_to_goal, methods, executable, docker, src/methods/cycombine_all_con...
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, docker/login-action@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/